Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1997 185 9e-42 >seq1997 Length=5797 Score = 185 bits (204), Expect = 9e-42 Identities = 598/920 (65%), Gaps = 22/920 (2%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || ||||||||||||||| |||||||| || || | || || || Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||||||||||| ||||| |||| ||| | | | | ||| || | |||| ||| Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||| || | ||||||||||| ||||| |||||| | ||||| || || || Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | || ||||||| || ||| | ||| | |||| ||| | || | || | || Sbjct 2004 GCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT 2063 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAA--CA-TGC 21480 | | | || || | | | | || | | || | |||| || ||| Sbjct 2064 TTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGTGCAAATGCACTGC 2123 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 |||||||||||| | |||||||| | || |||||||| ||||| || | ||| || Sbjct 2124 AAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGACCCGG 2183 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCC 21600 ||| ||||| | ||||| |||||| | || || ||||||||||| || || || || Sbjct 2184 CATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAAGATTCC 2243 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCA 21660 || ||||| ||||| |||| | || |||| | || || || || || ||||| Sbjct 2244 TTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAAT---GAATC-GGATTCA--ATCCA 2297 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 |||| ||||| | || |||| ||||| || | || | ||| | ||||| Sbjct 2298 TTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGTGGAAAAG 2357 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 || | ||||| || |||| ||| | ||| |||| Sbjct 2358 CTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAAGAGAATAGGTTTCGCT 2417 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840 || ||||| || ||| || || |||||||| ||| || | || || | | ||||||| Sbjct 2418 GTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGATATTGAAC 2477 Query 21841 CTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 ||| | ||||| | |||| ||||||||| || || || || || ||||||| Sbjct 2478 TTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGCAGCAAAAA 2536 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA----TTTTTTCCAATCT 21955 | || || |||| ||| ||||||||| || | || | || | || ||||| ||| Sbjct 2537 AAGCTAAAATATGTTTGATAAAATATTTCTCATCAT-TATTCAGCTTATTGTTCCAGTCT 2595 Query 21956 AATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTT--T 22013 ||||||| | ||||| | |||||| | |||||||| || || | | ||| | Sbjct 2596 GATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGC--TTCCATTTTCT 2653 Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTATTTGAT- 22072 ||||| ||| ||||||| | | |||| || || || || || | | | |||| | Sbjct 2654 TATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAATCACGAAAC-GGTCTTTGTTC 2712 Query 22073 TCAACTAAAAGTGGTTCCAT 22092 || ||||| |||||| || Sbjct 2713 TCTTGTAAAATTGGTTCTAT 2732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531664509718360