Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq4502 114 1e-20 seq12862 89.7 6e-13 seq10324 87.8 2e-12 >seq4502 Length=2986 Score = 114 bits (126), Expect = 1e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| || ||| ||||| |||| || | ||||| ||||| || || || || Sbjct 1086 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1145 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 || ||||| ||| ||| | ||||| | || |||||| |||| ||||||||||| Sbjct 1146 TGCACGTTGGCGTGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 1205 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 | ||||||| || | || |||||||| || || ||| ||||| ||||| || || Sbjct 1206 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 1265 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213 |||||||| | | || || ||||||| ||| || || | ||| | |||||||| Sbjct 1266 TTGTTGGTCAGCACCGAGCCCTGCGCTTCCATCACCGCACGGCTCACGAAATTTTCGGAG 1325 Query 7214 GCAATCAA 7221 |||||||| Sbjct 1326 GCAATCAA 1333 >seq12862 Length=1115 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| ||||| ||| ||||| || |||| || || || ||||| || Sbjct 1076 CAGCAGGGCCAGGTAGACAGCAGCGTTGGCCTGGGAGCCGGCGTGCGGCTGTACGTTGGC 1017 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 | | | | | ||||| ||||| ||||| || || ||||| | ||||| ||| | Sbjct 1016 GTAGTCGGCGCCGAACAGCTCTTTGGCACGGTCGATGGCCAGTTGCTCGACGATGTCGAC 957 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | ||||||||||| || || ||||| || || || ||||| || |||||||| | Sbjct 956 GTACTCGCAACCGCCGTAGTAGCGCTTGCCCGGGTAACCTTCAGCGTATTTGTTGGTCAG 897 Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188 ||| || ||||| | ||| || Sbjct 896 CTGAGAGCCCTGCGCCTGCATCAC 873 >seq10324 Length=1392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060 || || ||||| ||||| || ||||| | ||| |||||||| || | | | ||| Sbjct 787 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 728 Query 7061 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCC 7119 || ||||| | | || || || || || | ||||| | ||||| | ||| | || ||||| Sbjct 727 AGCTTCTTGA-CGCGGTCGATGGCGAGCTGCTCGACCACATCGACGTTTTCGCAGCCGCC 669 Query 7120 GTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 || || || ||||||||||| || || || ||||||||||| Sbjct 668 ATAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGT 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553107779580120