Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007024.1 Length=55770 Score E Sequences producing significant alignments: (Bits) Value seq1098 86.0 2e-12 >seq1098 Length=8903 Score = 86.0 bits (94), Expect = 2e-12 Identities = 185/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 18939 ATCGAGAACTTCAAGGCGTTCATGCTCCACTGTACGGCGAACAACTACGAGTACAACTAC 18998 ||||| | | | || || |||||||| ||||| ||| ||| | ||| ||||| Sbjct 1384 ATCGAAAGCCTGAAAGCCTTCATGCTGCACTGCGCGGACAACGCGCTGGGCTACGACTAC 1443 Query 18999 TG--TGTTCGTGGTTCTCGTAGTCACGCCGAGCAGT--TGGAAGTCATGGCGCTGGCCGG 19054 || || || ||| | | || ||| | ||||| | || | ||| ||||||||||| Sbjct 1444 TGGCTGACCGAGGTGCGC--AGCCAC--CAGGCAGTGCTCGACGCCATCGCGCTGGCCGG 1499 Query 19055 CTTCGCGGACATCTCGTGGGCCGGCGGTAAGTTGGCTCCGATCTGGACTGCGGACGGCCA 19114 ||||| | | | |||||| || | ||| | |||| | || || | || Sbjct 1500 CTTCGGCCAGGTGACCTGGGCCAAGGGCCGGCTGGGCGTGGCCTGGGCGGCCGATGAGCA 1559 Query 19115 GCCGTTGAATGGTGTGGTCAATATGGCCACGATCACAGATACCCAGTTCCAGATCGATTA 19174 ||| || || |||||||| ||||||||||||| | |||||||||| ||||||| Sbjct 1560 GCCCCTGTCCGGCGTGGTCAACATGGCCACGATCAAGAAGGGCCAGTTCCAGGTCGATTA 1619 Query 19175 CACTTTGGCCAATGCGGCTGATGGCGTCGAGTA 19207 ||| ||||||| || || || ||| ||||||| Sbjct 1620 CACCCTGGCCAACGCTGCCGACGGCATCGAGTA 1652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 178267134937176