Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq1131 639 3e-179 seq8333 351 2e-92 seq7410 129 1e-25 seq1720 120 7e-23 >seq1131 Length=8710 Score = 639 bits (708), Expect = 3e-179 Identities = 1771/2657 (67%), Gaps = 136/2657 (5%) Strand=Plus/Minus Query 2913 TCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAAGAAGGACGGTGCGG--ACTACAA 2970 |||| |||||||| || | || | |||||| ||||| |||| |||| ||| ||| Sbjct 5401 TCGAGATGCGCATGGTGCAGCTGGTGCTGAAGGACCAGAAG-ACGG-GCGGCGACTTCAA 5344 Query 2971 GGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGCGCGCGTG---CGCAAGTACGA 3027 ||| ||||||||||| ||||| || | ||||| ||||||||| ||| ||| | Sbjct 5343 GGAGATCGACCTGCTGGGCCGGCAGCTGGAGCGCACGGCGCGCGTGGAGCGC---TACCA 5287 Query 3028 CGAG-ACGGGGAAGGAATCGGATCTGAACCCGAAGATTGCGTCGCGCAACGCCGGCCCGA 3086 ||| ||||| |||||| || ||||||| || ||||| |||||||||| | || | Sbjct 5286 -GAGCACGGGCAAGGAAGGCGACTTGAACCCCAACATTGCCGCGCGCAACGCGGCGCCCA 5228 Query 3087 AACGCCGTGCGCCCCGTAACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGT 3146 | ||| || || ||| | ||| ||| || ||| | || | | || | Sbjct 5227 AGCGCACGCCGAAGCGCAACCACTTCACCGAAGAGCAGATCGAGAAGCTGCTGGAGATCT 5168 Query 3147 TCCGCGATTCGCTGTTCGACTAT--CAGAAAGTC-TGGTAT-CGGA-ACGGCGATCAGCG 3201 ||| ||| | || | ||| | |||| ||| | || | |||| |||| Sbjct 5167 TCCACGAGCAGAACTTTGGGTATGCCGCGAAGTGGTGGGAGGCGCAGACGG-----AGCG 5113 Query 3202 CACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGC 3261 |||||| | ||||| |||||||||||||| || || |||||||| || |||||||| Sbjct 5112 CACGCGGCTGCTGCTGAAGTCGCGGCAGATCGGGGCCACTTGGTACTTTGCCCGCGAGGC 5053 Query 3262 GCTCGTCGACGCCCTCGACACCGAC---CGTAATCAAATCTTCCTGTCGGCGAGCAAGGC 3318 ||| | |||| || || || || ||||| || ||||| || || ||||| Sbjct 5052 GCTGATACGCGCCATC---ACGGAGGGGCGCAATCAGATTTTCCTTTCTGCATCAAAGGC 4996 Query 3319 TCAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGA 3378 ||||||||| |||||| |||||| | || || |||| | | | | || Sbjct 4995 GCAGGCGCACCAGTTCAAGACGTACATGCTGGCCTTTGC---CGGGCTGGTGGGCGTGGA 4939 Query 3379 GCTCACGGGCGATCCGATTATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAA 3438 ||| | ||||| || || | || ||| ||| ||| |||| |||| ||||||| || Sbjct 4938 GCTGAGCGGCGACCCTATCGTGCTGTCGAACGGTGCGGAGCTGCACTTTTTGGGCACCAA 4879 Query 3439 CGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCC 3498 ||| || |||||| | | |||| ||||||||||||| || | ||||||||| | Sbjct 4878 TGCGAAGACGGCGCAGGGGCGCAGCGGCGACTTCTACTTCGATGAGTTCTTTTGGGTGTC 4819 Query 3499 GAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAA 3558 | || ||| |||| |||||||| ||| | | |||||||| |||||||| |||||||| Sbjct 4818 GGGCTTTCGCCAGCTCAACAAGGTGGCCGCGGCCATGGCGACGCACAAGCATTGGCGCAA 4759 Query 3559 GACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGC 3618 |||||||||| ||| ||||| | | |||| |||||||| ||||||||| |||| | Sbjct 4758 GACGTACTTCTCCACCCCGTCGGCCATGTCGCATGAGGCGTATCCGTTCTGGAACGGCAC 4699 Query 3619 GCA-CGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGG 3677 | | ||| ||| |||||| | ||||||| |||| |||||| |||||||| | Sbjct 4698 GGAGCGC-AACAAAGGCCGCAGCAAGGGCGAGGCCATCACCATCGACGTGAGCCACGCAG 4640 Query 3678 CGCTCGTGCGCGGCATGTTGTGCGAGGACG--CGC-AGTGGCGGCAGATCGTGACCGTGC 3734 ||| |||||||| | ||| || || ||| ||||||| | | ||||| | Sbjct 4639 CGC---TGCGCGGCGGCATCCGCGGGGCCGATCGCAAGTGGCGCGACGTGGTGAC---GA 4586 Query 3735 TCGATGCGATGGCGGGC---GGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGT 3791 |||| | ||| || |||||| ||||||||||||||||||||||||| || Sbjct 4585 TCGAGGACGCGGCACGCCTGGGCTGCAACCTGTTCGACATCGACGAGCTGCGGGAAGAAA 4526 Query 3792 ACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGA-TTCGCTGTCG 3850 |||| | || || ||||| || ||| ||||||| ||||||||||||| |||| | Sbjct 4525 GCAGCCCGGAAGAGTTCGCCAACCTGTACATGTGCGAGTTCATCGACGACAGCGCTAGC- 4467 Query 3851 GTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3910 |||||| ||| ||| |||| |||||||||| ||| ||||| | |||||| Sbjct 4466 CTGTTCACGCTCAAGGAAATGCAGGGCTGCATGGTGGACAGCTGGGAGGCGTGGGCG--- 4410 Query 3911 GACTTCTCGCNNNNNNNNNNNNNNNCGTTCG-GCTATCGCGAGGTGTGGGTCGGCTACGA 3969 || | | || ||| || || | | ||||||||| || ||||| Sbjct 4409 GATTGCAAGCCGTTTGCCACGCGGCCGTACGCGCACTTTC-CGGTGTGGGTGGGGTACGA 4351 Query 3970 TCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4029 || ||| ||| ||||| | |||| ||| | Sbjct 4350 CCCATCGCACACCGGCGATGCTGCGGCGCTGGTGGTGATTGCACCGCCGCGGGCGCCGGG 4291 Query 4030 NNNNNCCTTCCGCGTGCTCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGC 4089 ||||| |||| | || || |||||| || ||||| ||| | ||||| Sbjct 4290 CGGCAAGTTCCGGCTGCTGCACCGGCAGCAGTTCAAGGGGGCGGACTTCGAGCAGCAGGC 4231 Query 4090 CGCGGCGATCGAGGCGATCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCA- 4148 | ||| ||| |||||||||||| | |||||| |||||||| |||||||||| Sbjct 4230 AGAGGCCATCCGCGCGATCACGCAGAAGTTCAACGTGACCTACATCGGCATCGACACCAG 4171 Query 4149 CGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGC 4208 ||||| ||||||| |||||||| ||| ||| ||||||||| || || | || || || Sbjct 4170 CGGGC-TGGGGCAGGGCGTCTATCAGAACGTCATCAAGTTCTTTCC-GCAGGCG-CGGGC 4114 Query 4209 TGA--ACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCG 4266 | | ||| |||||||| | |||||| ||||| |||| | || || || | Sbjct 4113 CTACCAGTACAGCGTGGAGGTGAAGAGCCGCCTGGTGCTGAAGGCCAAGCAGGTGATCGG 4054 Query 4267 GAACGGCCGCCTGCAATTCGAC-GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGA 4325 || |||||| | | | ||| ||||| || || ||| |||| |||||||| ||||| | Sbjct 4053 CAAGGGCCGCTTTGAGATGGACAGCGGG-TGCACGGATGTGGCAGCGGCGTTTATGGCCA 3995 Query 4326 TCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACACCGCCGGCCGCACCGACG 4385 || || | ||||||| | || ||| ||||||||||| ||||||| ||| | Sbjct 3994 TCCGCAAGGTGCTGACGGCATCCCAGCGGCAGATCACCTACACCGCGGGCCGCAGCGATG 3935 Query 4386 AGACGGGCCACGCCGACCTGGCGTGGGCGTGCCTGCACGCGATCGACCGCGAGCCGCTCG 4445 || | |||||||| || ||||| ||||||||| |||| || ||||| ||| | | | Sbjct 3934 AGGCCGGCCACGCGGATCTGGCCTGGGCGTGCATGCATGCCTTCGACAACGAATCTTTGG 3875 Query 4446 CCGGCG--GCGGCATTCATTCATCTTCATTCACGGAGTTT------TACGCATGAGCAAg 4497 |||||| | ||| | || ||| | | |||| || | |||||| ||||| Sbjct 3874 CCGGCGATGTGGCCGGC-GGCA-ATTCTTCGATGGAGATTTTTTGATGCGCATGCGCAAG 3817 Query 4498 -----cgccgatcgcgcgcgccgcgcacgttcgc--ggccgcgcccaatccgagcgccgg 4550 | | | | | |||| | | ||| || ||| ||||| | | |||| Sbjct 3816 GCAGCAACAGCCCACCCCCGCCACACCCGTCAGCCAGGCACCGCCCTGGCGCACCGCC-- 3759 Query 4551 cagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCGACGATCCGACGCCCGTCATGAA 4610 | ||| || || | |||| ||| ||||| || | ||| ||| || || | Sbjct 3758 CGGCGGCGGGCGAG---GTGC--AGGCGTTCACCTTTGGCGAGCCGGAGCTGGTGCCCCA 3704 Query 4611 CCG-GGCCGAGATTCTCGATTACGTCGA---GTGCTGGTCGAACGGCGAATGGTTCGAGC 4666 ||| ||| | ||||||||||| || | || || || ||| | |||| ||||| Sbjct 3703 CCGCAGCC----TGCTCGATTACGTGGAAACGGCCT--TC-AATGGCAAGTGGTACGAGC 3651 Query 4667 CGCCGGT-CAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCACGCACCATAGCTCG 4725 ||||| | |||| | | ||||||||| || | ||||| ||||||| || Sbjct 3650 CGCCGCTGCAGC-TGGACGGCCTGGCCCGCGCGCTGCGCGCATCGCCGCACCACGGCAGC 3592 Query 4726 GCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACATTCCGCCCGCAC-CGCTGGCTGTC 4784 || | || || ||| ||| | |||||| | | ||| ||||||| ||| |||||| Sbjct 3591 GCCATCTTTTTGAAGCGCAACCTACTGGCGGCCAGCTTCATCCCGCACAAGCT-GCTGTC 3533 Query 4785 GCGGCACG-CGTTC-GAGCGGTGGGCGCTCGATTTCCTGACGTTCGGCAACGGCTATCTG 4842 || | || ||||| | ||| | |||| | || || || ||| | ||||| ||||| || Sbjct 3532 GC-ACGCGACGTTCTGCGCGCT-GGCGTTGGACTTTCTCACGCTGGGCAATGGCTACTTG 3475 Query 4843 GAACGCCGCCGCAACATGGTCGGCGGCACG---CTGCGGCTTGAGCC-CGCGCTCGCGAA 4898 || || ||| | | ||||||| ||| ||| || ||| |||| | Sbjct 3474 GAGCGGGAGCGCTCC---CCCTTCGGCACGGATCTG-GGCCTGCGCCATTCGCTGGGCCT 3419 Query 4899 GTACGTCCGGCGC---AAGGCCGATTTCAACGGCTTCGTGTACGTGAACGGCTGGCAGGA 4955 |||| |||||| ||||| | | | ||||||| || | |||| || Sbjct 3418 GTACACGCGGCGCGGGAAGGCAGGGCGCTATTTCTTCGTG--CGGCA----CTGGGGCGA 3365 Query 4956 GCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGAC-ATC--AATCA 5012 | |||||||||| ||| ||| || | ||| ||||| |||| ||| || Sbjct 3364 GGAACACGAGTTCGCGCCGGACTCTGTCTGGCAG---GTGCGCGAGGACGATCTGGCCCA 3308 Query 5013 GGAGGTCTACGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAATC 5072 |||||| || ||| |||| ||||| |||||| || |||| |||||| |||||||| | Sbjct 3307 GGAGGTGTATGGCGTGCCGGAGTACCTGAGCGCGTTGCAGTCGGCCCACCTGAACGAGGC 3248 Query 5073 GTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTGTA 5132 | || |||| || ||| ||| ||||||||||||||||| |||||||||||| |||| Sbjct 3247 CGCCACCATGTTTCGCCGCCGGTACTACGAGAACGGCAGCCATGCCGGCTTCATCATGTA 3188 Query 5133 CATGACCGACGCCGCGCAGAAGCAGGA-CGACGTGGACAACATGCGCGACGCGCTGAAGA 5191 | ||| ||||||| || | |||| | ||||||||||| ||||||| |||| | Sbjct 3187 CCTGAGCGACGCCACGGTG-AGCACCACCGACGTGGACACGCTGCGCGAGCAGCTGCGCA 3129 Query 5192 ACGCGAAGGGGCCTGGCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGAAGG 5251 | | |||||||| ||||||||||||||| ||||| || ||||||| ||||| ||| || Sbjct 3128 AGTCCAAGGGGCCGGGCAACTTCCGCAACCTGTTCCTGCACGCGCCTGGCGGCAAGGCGG 3069 Query 5252 ACGGCATCCAGCTCATCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACATCA 5311 ||||| | |||| |||||| | |||| ||||||| || ||||| ||| | ||||| Sbjct 3068 ACGGCTTGAAGCTGATCCCCATCAGCGAGATCGCCGCCAAAGACGACTTCGCCGCCATCA 3009 Query 5312 AGAACGTGACGCGC---GATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTG 5368 ||||| || || | ||| |||| ||||| |||||||||||||| |||| | Sbjct 3008 AGAAC---ACCAGCATGGCCGACGTGCTGGCCGCCCACCGCGTGCCGCCCGGCCTGCTGG 2952 Query 5369 GCATCGTGCCGAGCAATTCGGGCGGGTTCGG-TACACCGGACACCGCCGCGCGCGTGTTC 5427 ||||| | || | ||| |||| || ||||| || |||| | || || || ||| Sbjct 2951 GCATCATCCCCAACAACACGGGAGGCTTCGGCAACGCCGG-CGAGGCTCTGCAGGTCTTC 2893 Query 5428 GGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTGGCTCGGC 5487 | |||||| ||| |||| | ||||||||| | | ||| || || ||| | || Sbjct 2892 ATGGCCAACGAGATCGCGCCGATTCAGGCGCGCATGCGTGGGCTCAATGAGTGGATGGGG 2833 Query 5488 GAGGAGGTCGTGAGGTT 5504 | |||||| ||| |||| Sbjct 2832 GTGGAGGTGGTGCGGTT 2816 Score = 313 bits (346), Expect = 6e-81 Identities = 629/916 (69%), Gaps = 35/916 (4%) Strand=Plus/Minus Query 735 CAGTTCGATGTTTTCGGCCACGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTT 794 |||||||||| ||| | | ||||| |||| ||||||||||||||||| ||||||| Sbjct 7773 CAGTTCGATGCCGTCGATGAGGGCGCCGCGGCCGTAGTCTTCGACCACGTAGTCGTCGTT 7714 Query 795 CGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTG-CGCCGGC 853 ||||| ||| |||||| | ||| || ||| | ||||||| |||| || |||| Sbjct 7713 GGACGACTCGAAGTTCTGCACCGCATCGACCTCGGGCGCGTCCTTCA-CGTGGCGGCGGC 7655 Query 854 GCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCT 913 ||||| | ||| ||||||| ||||| || |||||| | ||||| | || | || || Sbjct 7654 GCGCGGCGATCTGCCAGTAGATGGACAGGTTGGACAGCGTGGTGACGAGCACCTTGC-CT 7596 Query 914 TCGGG-AAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATC 972 ||||| ||||| |||||| ||||| |||| ||| | |||||| || | || | Sbjct 7595 TCGGGGAAGAAGGGCACGGTGACGGCGCGCAGGCCGCCTACGCGCTTTTGCGAGATGACC 7536 Query 973 AGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTCGCGTTGACGATCGGGAAATACTTG 1032 ||||||| |||||| ||||| | | |||| |||||| | |||||| ||||| Sbjct 7535 AGATCGGTGGCGAGCGTTTCGGTGGCGGGCTGCTCTTGGTTGACCAGCGGGAAGAACTTG 7476 Query 1033 TCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGGAACCACGGG 1092 || |||| ||| |||||||| ||| |||||||| | | ||| | ||| |||||||| Sbjct 7475 TCATGCATGAGCCCGCGGCCGAGGATGGCGACGAGGTCGGGGTCGCCGTGGTACCACGGG 7416 Query 1093 TCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCC 1152 |||| || | || | | | || |||||||||||||||||||| ||| ||| | | Sbjct 7415 TCGAGCA--GCTGA-ATGCTGTCGTACACGAGCGCGTCGAGGTTCTTGTACTCGGC--GC 7361 Query 1153 TTGC--CGACGAGCACCTTGCCGGCCTGCTTCGCGCCTTC---GTGCAGCACGCGCTGCG 1207 | || || | ||||||| ||| ||| | || | || ||||| | Sbjct 7360 TGGCGTCGCTGCCCACCTTG------ATCTTGGCGGCGTCGGAGCCCATGACGCGGGCGG 7307 Query 1208 CTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTG 1267 | || |||||||||| ||||||||||| |||||||||| |||| ||| |||| | Sbjct 7306 CGGCCTTGTCGCGGTACTTCTGCAGCCAGCCCTTGTTCACGTCTTGCAGCAGGGGGTGGG 7247 Query 1268 CCTGACGGTCGGTCGTCGCGGCCG-CCTTCACGCCGTTCCAGCCGATCATGATGCGATCG 1326 | ||| ||| |||| | || |||||||| ||||||| | ||||| ||| Sbjct 7246 CGGCGAGGTTGGT-GTCGGGCTCGATGGAGACGCCGTTGAAGCCGATGGTCATGCGGTCG 7188 Query 1327 AGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTTCGCC 1386 |||||| | |||| |||| |||||||||||||| ||||||||||| | | |||| Sbjct 7187 AGCGCCTGGCGCTTGATGATCGCGTCGCGGATGCGCGTCTGGAAGTCGGGGCGGTGCGCC 7128 Query 1387 CACATGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAG 1446 || ||||||| ||| || | | | ||||||| ||| ||||| | ||||| |||| Sbjct 7127 CAGGCGTCGAGCAGGCGGTAGGTGAACTGCGTGTCGAAGTTGGTCTGCACGCAGGCGTAG 7068 Query 1447 ----CGGTTGCTGTCGA-GCGCCGTCGGGTCGATCGGTTGGCG--CGCGGCCTTCGTC-G 1498 ||||| | ||||| || ||| | | ||| | ||| | ||| || | | Sbjct 7067 CCGTCGGTTTCGGTCGATTCGACGTTGCG-----CGGCTTGCGGACCTTGCCGGCGGCTG 7013 Query 1499 TGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT 1558 ||| ||||||||| || || ||||||| ||| || ||| | ||| ||||| | | | Sbjct 7012 TGTTGGTGCGGCTGGCAATGGGGCCGGTGACGCCCACGCCCACCTTGTCGCCGGCCTGGT 6953 Query 1559 CGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTT 1618 | |||| | | ||||||| || ||| || |||||||||||| ||| Sbjct 6952 CATCCACGCCGATGATGTTGATGGAGGCCAGGAACGCGGACGATTCCTGCATGCGGCTTT 6893 Query 1619 CGAGCCGCTGTTGCAC 1634 ||||| || ||||| Sbjct 6892 CGAGCTTTTGCTGCAC 6877 Score = 183 bits (202), Expect = 7e-42 Identities = 292/418 (70%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 2144 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2203 |||| |||||||| | |||||| |||||||| ||||| || |||| |||||| | || | Sbjct 6296 GCTTGGCGGCGAACTCCAGCGCCTCGGTGCCCAGGCTGGCGGGGTTGTCGGTGACGGCCA 6237 Query 2204 GCCCGACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGA 2263 | || ||||| |||||||||||| |||||||||| ||||||||||||||||| || ||| Sbjct 6236 GGCCCACGAGGTACGCCTCGCCGGTGTCGGCGAATTCGGGGTTGATCTCGATGGAGGTGT 6177 Query 2264 AGAGCTTCTGGCGCTTCTTCGACAGTGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2323 |||||||||||| ||| ||| ||| | | | | || || ||| || Sbjct 6176 AGAGCTTCTGGCCGGCCTTGTTCAGCTCGATCAATGCCGGGTTGGGCGAGAGCTGGGCGA 6117 Query 2324 ACAGCGCCATCTTCCCTTTCAGCGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCA 2383 | || || | |||| ||| |||| ||| | ||| | | ||| | || || Sbjct 6116 AGAGGGCGAGCTTC---TTCTTGCCGCCGATTTCCACCTCTTCGGTCTTGACGGCCTGCA 6060 Query 2384 CGTCGCCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCT 2443 ||||||| || |||| ||| || |||| || ||| | |||||||||||||| Sbjct 6059 CGTCGCCGTAGGCGCGGAAGGG-------GCCGTCA--GGCAGCACGCCCTTGATGTGCT 6009 Query 2444 CGACGTTCACGCGTGCGCCGTACAGCTTCGGGTCGTAGTGCTTCGCCATCTGCGTGAGCC 2503 | | | | | ||| |||| |||| || |||||||| ||||| ||| || Sbjct 6008 CCAGGCTGATGCGGGCGCTGTACGTGTTGCGGTCGTAGCTGGCGGCCATTTGCTCCAGGT 5949 Query 2504 ATTCACGCTTGATCTCGCGACCGTCGACGGTCGCGCCTTCCACTGCGACGCGGAAGAA 2561 | || | ||||| ||| |||||| ||| ||||||||||| |||||||||||||| Sbjct 5948 GGGCGCGTTCGATCTTGCGGCCGTCGGTGGTGGCGCCTTCCACGGCGACGCGGAAGAA 5891 Score = 100 bits (110), Expect = 7e-17 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 355 GCGCTCGAACTGGTCGGGCAGCGTGAGCCCGTTCGAGAGCGCGTAGGCCGCGATCGCGAG 414 ||||| | | |||||||||| | | |||| | ||| |||||| ||||| | ||| Sbjct 8210 GCGCTGGTAGTGGTCGGGCATGGGCATGCCGTGCTGCAGCACGTAGGGGGCGATGGTGAG 8151 Query 415 CGCGCCGTCGAAGTCGCCGGCGTCGATGCGCCAGACCATCACCGTCACGAGCACGTCGTC 474 ||| | || || |||||||||||||| ||| ||||| || |||||| |||| Sbjct 8150 CGCCAGGGCGTAGGCGCCGGCGTCGATGGCCCACACCATGCAGGTGGTGAGCACCGCGTC 8091 Query 475 CTGCGCGCCGCGGCCGCCGCTCAACACGCCCGCCACATAGTCGGCGTACTCCGGCAGCAG 534 | ||||||| ||||||| | | | |||| | | ||||| |||| | |||||||| Sbjct 8090 TTCGGCGCCGCCGCCGCCGGTGAGCGCGCCGCCGATCCAGTCGAGGTACGCGGGCAGCAG 8031 Query 535 CTT-GCGTTTCAGCTCGATCTTCCNNNNNATCGACTGAATGCCCTTGAGCGCGCGGCGGT 593 ||| || || | | | ||| | ||||| ||| |||| | ||||| || Sbjct 8030 CTTGGCCTTGGTGGT-GCGCTTGAGCTGGACGGACTGGATGGCCTTCAAGGCGCGCTTGT 7972 Query 594 CGGCCGCGAGCTTCGCGAGCATCAGCT 620 |||| ||||||||| | ||||| |||| Sbjct 7971 CGGCGGCGAGCTTCACCAGCATGAGCT 7945 >seq8333 Length=1724 Score = 351 bits (388), Expect = 2e-92 Identities = 739/1083 (68%), Gaps = 52/1083 (5%) Strand=Plus/Plus Query 25250 AAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGA 25309 || ||||| ||| || |||||||||| ||| | |||||| || || || ||||| Sbjct 627 AACTCGGCCAGGTAGGTGTCGGTGATGGATTGGTTGAACACCAGGTTCTCCAGCGGCGGC 686 Query 25310 ACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGT---G 25366 ||||||||||||||||| ||| | | |||| || || ||| || | | Sbjct 687 ACCGGCGTGTAGTCGTAGCTGATCTGCAGGCGGCCGACGGCCAG---GTCTTCCTTGCCG 743 Query 25367 TTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGC 25426 ||| | || || |||| |||| | | ||||| || |||||| |||| | | Sbjct 744 TTCAGATCGGGGTCGAAGTACGCATTGGCCCCGATGAGATAGCCGCCATTGACCAGATCG 803 Query 25427 CGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCG 25486 || || | || ||||||| ||| ||||||||| | ||||| || | || || | Sbjct 804 CGGAAGCGGCTGTTGATGTAGCCCAGCATGTCGCGCACCAGCGAGGGGTGCATGGGCTTG 863 Query 25487 TCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTG 25546 |||| || | | |||||||| ||||| | ||| | |||||| |||||||| ||| Sbjct 864 TCGATGAAGACGAAGTGCGCTTCTGCGATGGTGTCGGCCAGCACCTGGGCGGTGCGGGTG 923 Query 25547 TAGTTCTCGAACGCGAACTT-----CGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACC 25601 ||| ||| || |||||||| ||| || || ||| |||||| |||||||| | Sbjct 924 TAGGGCTCAAAGGCGAACTTTCCGCCGG--CGGCCTCGCAGGTGCGCGAACCCCAGAAGC 981 Query 25602 GGAAGCCGTTGCGGTTCACGAGCGTCGTCACTT-CGTGCTCGTTCAGGTAGCCCGCATCG 25660 || | |||| ||| | ||||| || |||| | |||| ||||||||||||||||||| Sbjct 982 GGTATCCGTCGCGCCGAATCAGCGTGGTGACTTCCTTGCT-GTTCAGGTAGCCCGCATCG 1040 Query 25661 GTCGCCGGGTCCTGCAAATCCCACGACACGTCG-GCGCTGATGCCGGACACGCCGTTCAC 25719 | |||||| ||||| || | |||| ||| ||| ||||||| ||||||||| || Sbjct 1041 CTGGCCGGGCTCTGCAGGTCGAAGAACACATCGCGCG-TGATGCCTTCCACGCCGTTGAC 1099 Query 25720 GACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCC 25779 || | || ||||| | |||||||||||| || || | || | ||| ||||||| ||| Sbjct 1100 CACCATGTTGGAAATGGACTTGTGCCAGCCAATCTCCTGATCCAGCTTGGCGCGCAGGCC 1159 Query 25780 GGCGGCGATCGCCGGCGCCGGG-ATGACAGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGA 25838 ||| || | || || |||| | | | | | | || | | |||||||| | | Sbjct 1160 CAGGGC-ATAGGCGACGGCGGGCACCTCCACGGCCTCGCCCGCCTCGCCGTCCCAGGCCA 1218 Query 25839 GCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTA---CGCGG 25895 | ||| ||||| |||||||| | ||||| || ||||||| |||||| | ||| Sbjct 1219 GGAAGTTGGGCCACATCACCATCACCTCGCGCTGCCCGAACTCGCCGCGGTAGAGCACGG 1278 Query 25896 CGGCTTCTT--------------CCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCAT 25941 ||||||| | | ||| ||| |||| ||||| || |||| | Sbjct 1279 CGGCTTCCTTGGTGGCGGCATAGGCATCG--TTGGCGCCGCGGGCCGAAACGTAGGTGAA 1336 Query 25942 CGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCC 26001 ||||| ||| |||||| | ||| | || | ||||| | || || || ||||| Sbjct 1337 GGCGCGGAGCTGCTGCGCCACGGACGCCATGGCCACGGCCACGGCCTTGGTGTCCAGGCC 1396 Query 26002 GGGCGCCGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTT 26061 |||||| ||| ||||||||||||||||| | |||| || || ||||| |||| Sbjct 1397 GGGCGCGCCGATGATGCGCGGCTTCACGCCCAATTGCCCCTCGGCCGCCAGCAGGGCCTG 1456 Query 26062 GATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCTCGTC 26121 | ||| ||| || |||| || || ||||||||||||||| | | || || | Sbjct 1457 CAGGCCGGTGCGCTGGCCGGCCTCGGTGGTGGTGCCGATGACGTTGGTTGCGGTTTCCGC 1516 Query 26122 GGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTC-TGCTTGCCGA 26180 |||| |||||||||| |||||||| || || || | ||| | | ||||||| || Sbjct 1517 GGCGGTGGTGCCTTCGGCCACGCGCACCACCACCGTGA-TGGCGCGGGCTTGCTTGCTGA 1575 Query 26181 TCGCGTCGAGCGTG-CGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGA--GCGCCGCGA 26237 | ||||| |||| | ||||| |||||||| | |||||||||||||| |||||| | Sbjct 1576 TGGCGTCCAGCGCGCCGGCG-AGCGTGCCGCCCGCGCCGGCCTTGCCGATGGCGCCG-GC 1633 Query 26238 CGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCG 26297 || ||| ||||||||||| || || ||||| ||||| |||| |||||||||| Sbjct 1634 CG-GGTTGGTCAGCAGCACCGGTACGTTCAGCGGGAACGC-CTCG-----GCGTCGGCCG 1686 Query 26298 CCG 26300 ||| Sbjct 1687 CCG 1689 >seq7410 Length=1926 Score = 129 bits (142), Expect = 1e-25 Identities = 763/1190 (64%), Gaps = 82/1190 (7%) Strand=Plus/Minus Query 29610 ACGTGTAGTGCGCGGTGCCGCG-CTTGGCCCGGTCGACTTCGGCGATGATGTCGGCGACG 29668 ||||| |||||| | || ||| |||| | ||| || ||||| || | |||||| ||| Sbjct 1586 ACGTGAAGTGCGAGC-GCAGCGGCTTGACGCGGGACACCTCGGCCATCACGTCGGCCACG 1528 Query 29669 TATTCGGCGGTTGCCGGGATGCCGTCGCGCGCGCCGACCGTCATCAAGATTTCGAACGTG 29728 | |||| | || | ||||| | || | ||| | || | ||||| ||| Sbjct 1527 AAAGCGGCACT------GACGTTGTCGCCCTCGGTCATCGTGAACACCAGCTCGAAGGTG 1474 Query 29729 CCCGGCCGGCCCTTCGGCGTCTTCTCGAACCACTCGCGCATCGCGACGTTCGCGCCGAAC 29788 |||| |||||| |||| ||||| |||||||||||| |||| | | ||||||| Sbjct 1473 TGCGGCGTGCCCTTGGGCGACTTCTGCCACCACTCGCGCACGGCGATCTGCCCGCCGAAG 1414 Query 29789 GACGCGCACACT-TCGCGCACGGCCGCGGCCGTGCCTTTCTTGCGCGCGATCCGGATCGC 29847 | || ||| | ||||||||| ||| ||||| | |||| | |||| || Sbjct 1413 GCGGC-CACGGTGTCGCGCACGCTGGCGAGGGTGCCGCGCCGGCGCTGCACTTGGATGGC 1355 Query 29848 CGCTTTCACGCGCGCGCGCTTCACCTGTTCGGGCCAGTAGTCCTTCCACGTCTCGACGCC 29907 |||| |||||||| | | |||||||||| | | ||||| || ||||| Sbjct 1354 GTTGCGCACGATGGCGCGCTTGATGTTCTCGGGCCAGTCGGCGCGCCACGCTTCCACGCC 1295 Query 29908 GAGGTGCCACGCGAGCCAAGGCAGAAACCGCAGCGGGATCGCGTCCGGGTCCATCAGCGC 29967 | ||||| || ||||| ||||| | | ||||||| | | |||| | |||||| Sbjct 1294 CATCTGCCAAGCCAGCCAGGGCAGCAGCTCCAGCGGGCAGGTGCTGGGGTTCCACAGCGC 1235 Query 29968 GCCGATGTCGACCGG--GATGTC--GCTGAT-GCGCGCGTTCGTGTCCGCGAGCCG-GCG 30021 || | || || | || |||| | || | |||| || | | || || |||| ||| Sbjct 1234 GCGG-TG-CGGCTGGTCGATGGCCTGCAGGCCGCGCACGGCCACGGCCTCG-GCCGCGCG 1178 Query 30022 CTCGAGCGCGGTCGCGTTCGGCGGCAGCAGCGA------------GGTTGCC-CGTCTAG 30068 || |||||||| ||||| ||||||| || || ||| ||| |||| || Sbjct 1177 GTCCAGCGCGGTGGCGTTGGGCGGCAAGAGGGACACCGCCGGGGTGGTGGCCGCGTC-AG 1119 Query 30069 TCATCCGCCACCCCGCCGTCGATCAGCTCGATTCCGGTGCAGTACGGC--GCCTGCTCGT 30126 ||| | || ||||| | ||| || ||||||||| ||| |||||| Sbjct 1118 TCAACGGCACCCCCGAAGGTGATGGTGGCGG---CGGTGCAGT--GGCTGGCCTGCGTAG 1064 Query 30127 GCGTCACGGGCACGCCGCCGGC-GGGCGAGTCGAGCAGCACCTTTTGCACGCCGGCGACG 30185 || ||||| |||| | |||| |||| || ||||| ||| ||| || ||| | Sbjct 1063 GCCCCACGGCCACGTCTGCGGCCGGGCTGGT-GAGCACCACGCGCGCCACACCTTCGATG 1005 Query 30186 CGCATCGCCGCGTGCAGGCCGTCGAC--CGTGATTTCCATGCCGATGCGCCGCATGTCCG 30243 ||| || || | | ||| |||| |||| | ||||||||| ||||| || Sbjct 1004 TGCAGGGCGGCATAGATGCC--CGACAGCGTGGGCTGGCGGCCGATGCGGTGCATGGCCT 947 Query 30244 CCGCGAACTTCGCGGTGCGCTTGCGGGCTTCCGCGAGCGCCACGCCGC--GA-TCCGGGC 30300 ||| | ||| |||||| ||| || || | | |||| | || ||||| | Sbjct 946 GCGCATAGGCGGCGATGCGCTGGCGTGCGGTGGCAATC---ACGCTGGTGGAGTCCGGCC 890 Query 30301 CGGAGAAGAAGCG----CAGCGTCGCGCGGATCGCATACGGCACGACTTGC--GCGCTCT 30354 | | | |||| || || ||| ||| || || ||||||| ||| ||| || Sbjct 889 CCG----GCAGCGTGTACACGGTGGCGGTGATGGCGTAGGGCACGA--TGCCGGCGGCCT 836 Query 30355 GCACGATCACTTGGTCGGTTTGCGGGCGCACGCCTTCG------AGCGCCGCGCGCACGA 30408 |||| | ||| | |||||| ||||||||||| | ||| | || ||| ||| Sbjct 835 GCACCACCACCTCGTCGGTGAGCGGGCGCACGTCGTCGGCATTGACGGCGGCGGCCACCT 776 Query 30409 TGTCGATGAGCGCGTCGCTCGCCGTGCCGTCGCCTTCGCGCGACAGGACCGTGACAACCA 30468 | | | || ||| | | | | ||| ||| ||||||||||| |||| || |||| Sbjct 775 TCGCCAGCAGGGCGGCCGTGGGCACGCCCGTGCCGTCGCGCGACAGCACCGACACCACCA 716 Query 30469 TCACGCACGG-CTCGGGACTGCGCGCGGACGCGGACAGCACGCGGCCGTCCGCCGCGCGT 30527 | ||| ||| | || ||| || | ||| |||||| ||||||| |||| Sbjct 715 -CGCGCCCGGGCGATGGGCTGGTGGCCGCAGCGTCCAGCACCTGGCCGTCGGCCGTCTTG 657 Query 30528 GCATGGAACACGTACGCTTCTTCGGGGCCGGCGACGGAGAAGCCGCGCGGCGCGAGCTGC 30587 || || |||||||| || | | |||||||| ||| | ||||||||||||||||||| Sbjct 656 GCGTGAAACACGTAGGCGCCCACCGGGCCGGCCACGCTGTAGCCGCGCGGCGCGAGCTGG 597 Query 30588 ACGCGCTCGCGCAGACTGTCTTCGTCCTCATAGACC---GC----ATCGATACCGTGCTC 30640 | ||||||||| | ||| || | || ||| || || || | | | Sbjct 596 ATGCGCTCGCGGAAGGCGTCATCAGCTTCCATCACCTGGGCGACGGGCGGCACGGCG-TT 538 Query 30641 CGGATCGGCCGCCGTGACCACGAGCCGCTCGACATCGAACAGCGCCGCGATGTGTTCGAG 30700 || | ||| | ||||||||| ||||||| || |||| | ||| ||| || || || Sbjct 537 GGGGTTGGCGGGCGTGACCACCAGCCGCTGCACCCCGAAGAACGCGCCGAGCTGGTCAAG 478 Query 30701 CGTC-GTGCCGCGCGCGTAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTG 30749 ||| | ||||| |||||||| |||| | | || |||| |||||||| Sbjct 477 -GTCTGCCCCGCGGGCGTAGGCCAGCATGACGGCGTGCGCGCTGTCGTTG 429 >seq1720 Length=6403 Score = 120 bits (132), Expect = 7e-23 Identities = 189/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 26116 CTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTT 26175 |||| |||| | | ||| ||||| |||||||||||||| || ||| ||||| Sbjct 6327 CTCGGTGGCGCCTTCGCCATCGGCCACGCGCACGACGACCAGCACCGGGCGGCACTGCTC 6268 Query 26176 GCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGC 26235 ||| |||| |||| || ||||||||| || ||||||||||||||| ||||| Sbjct 6267 CTTGATGGCGTTCAGCGCCTGGGCCAGCGTGCCCTTGGTGCCGGCCTTGCCGATGGCCGC 6208 Query 26236 GACGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGC 26295 |||| || || | |||||| || || ||||| || | | ||| || |||||| Sbjct 6207 ATCGACCTTGGTGACCAGCACCGGACGGTTCAGCGGGAAAGTGGCCGCATCGGCGTCGCT 6148 Query 26296 CGCCGTGCAGACGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTC 26355 |||||| |||| ||||| ||||||||| ||||| ||| || | | |||||| Sbjct 6147 GGCCGTGGCCACGAGGCCGATCACGGCCGTGGACACGATGCGGATGGAATTGATGCCTTC 6088 Query 26356 GTTGATTTCGATGACGCGTACGCCGTGGTGG 26386 | | | ||| ||||||| | ||| || ||| Sbjct 6087 GCTCACTTCCGTGACGCGAATGCCATGATGG 6057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120272420526318