Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1997 365 1e-95 seq451 288 3e-72 >seq1997 Length=5797 Score = 365 bits (404), Expect = 1e-95 Identities = 990/1497 (66%), Gaps = 41/1497 (3%) Strand=Plus/Minus Query 363007 GATAAGATTATGAAGCGTCTTAAGAACCTTAGCTATGGACTG---GATCATGTTGATCCG 363063 |||||||||| | | | |||| || | |||| || || |||| ||| |||||| Sbjct 1516 GATAAGATTACGGATAGAATTAAAAAATTATGCTACGGCTTGAACGATCTTGTAGATCCG 1457 Query 363064 GCAGTTGTATCCATCAAGGTTGTTCAGGGTCTATATGATGGTGTTACAACTGTTCAGCTA 363123 | | ||| | || ||| | |||| | |||||||||||||||||| || | Sbjct 1456 GTAAAAGTAGCAATGCGCGTTATCGAGGGGTTGTATGATGGTGTTACAACTTCAGAGTTG 1397 Query 363124 GACAATCTTGCCGTAGAAACTGCAACTTATCTGACCATGACGCATCCTGATTACTCCAAA 363183 ||||||||||| | |||||| ||| | |||| || | ||||| ||||| || | Sbjct 1396 GACAATCTTGCAGCAGAAACCGCAGCAGCAATGACAATTGCCCATCCGGATTATGCCCAG 1337 Query 363184 CTGGCTGCTCGCATTGCAGTTTCGTCTCTTCATAAAATGACATCAAATAAGTTTTC-CAG 363242 |||| || | || ||| |||| ||||| || | || |||| || ||| ||| Sbjct 1336 TTGGCAGCAAGGATAGCAATTTCAAACCTTCACAAGAATAC--CAAAAAATCGTTCTCAG 1279 Query 363243 TGTCATGGATAGTC-TGTATAACTATGTCAATACAAAGACCGGTAAGTGGTCACCACTCA 363301 | || || ||||| |||||| ||| ||| ||| | || || || || Sbjct 1278 AAACGATGAAAGAAATGTATTTCTATGTGAATCCAAGAACCAATCAGGAATCTCCGCTTC 1219 Query 363302 TTGCCGATGACATTATTGAATGT-ATCCGTTCTAATGCGGAAGTTTTCGATGACGTTATC 363360 || | || || | ||| ||||| || | ||||| | |||| ||| | | | Sbjct 1218 TTTCAGAAGA-AGTATACAATGTGATTCAGGAAAATGCAGCTTTTTTGGATTCCCATGTA 1160 Query 363361 AATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTAC 363420 | ||| | | ||| || | || ||| |||||||| ||||||| ||||| | | | Sbjct 1159 ATTTACAATAGAGATTTCAACTACGATTATTTCGGATTTAAGACGTTGGAG----CGTTC 1104 Query 363421 CTATCTCGTA----TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGT 363476 ||||| || | ||||| | ||||| ||| | || || || ||||| |||||||| Sbjct 1103 GTATCTGCTAAAAATAAATGGAAAAATTGTGGAAAGACCACAACACATGTTGATGCGTGT 1044 Query 363477 TGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT----TC 363532 ||| |||| ||||||| || | ||||| | | ||||| ||| | || || Sbjct 1043 TGCCGTTGGAATCCATTTGAATGACCTGGATGCAGTATTGGAAACTTATGACCTGATGTC 984 Query 363533 TAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATC 363592 ||| | | || ||||| || |||||||| | | |||||| ||||||| || | Sbjct 983 CAAGAAGT----TCTTTACGCATGCAACGCCAACGTTATTCAATGCCGGAACTCCAAAAC 928 Query 363593 CACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTG 363652 | || |||||||| ||||| ||||| |||| ||||||| ||||| || || | | Sbjct 927 CGCAAATGTCTTCCTGCTTCCTTCTGGCAATGCAGGACGACAGTATCGACGGAATTTACG 868 Query 363653 ACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT--GCAGGCGGAATTGGTGTATCGAT 363710 | || || ||| | || ||||| | ||| || || ||||| || | || || Sbjct 867 ATACGCTAAAGCAAACAGCCAAAATTTC--ACAATCGGCTGGAGGAATCGGGCTTTCAAT 810 Query 363711 CCACAATGTTCGTGC-ACAGAACAGTTAC---ATTCGCGGCACAGGGGGATACTCGAATG 363766 ||| ||||||||||| || | ||| | || ||||| ||| ||| || || | Sbjct 809 CCATAATGTTCGTGCCACGG----GTTCCTATATCCGCGGAACAAACGGAACGTCAAACG 754 Query 363767 GGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAG 363826 | | ||||| ||| | ||||| || | |||| || | || || |||||||| |||| Sbjct 753 GAATTGTTCCGATGTTGCGTGTTTTCAATGATACCGCTCGTTATGTAGACCAGGGAGGAG 694 Query 363827 GAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGT 363886 |||| |||||||| |||||||| ||| |||| | || || ||||||||||| | Sbjct 693 GAAAACGCAAAGGAAGTTTTGCTATCTATATCGAAACATGGCACGCTGATATTTTTGATT 634 Query 363887 TTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATG 363946 | ||||| || ||||||| |||||||| ||| ||||||| |||||| | |||| || Sbjct 633 TCCTTGACCTGAAGAAAAACCATGGAAAAGAAGAAATGCGTGCGCGTGATTTATTCTTTG 574 Query 363947 CACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT 364006 | | ||| ||| ||| || ||||| || || ||| || | | ||| | | Sbjct 573 CCATGTGGACTTCGGACTTGTTCATGAAACGTGTTCAGGAAGATTCTACATGGACGTTGA 514 Query 364007 TTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTAT 364066 | || ||| ||||||| || || |||| ||| | | ||||| || | || || || | Sbjct 513 TGTGTCCAAACGAATGCCCGGGACTTTATGATATTTACGGTGAAGAATTTGAAGCGCTTT 454 Query 364067 ACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGA-AGCTATGG 364125 | |||||| |||| | | | || || ||| ||| ||| | || ||| Sbjct 453 ATACTTCTTATGAAGAACAGGGCAGAGGAAGAAAAACCATTAAGGCA-AGAGAACTTTGG 395 Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 || |||| || || ||||| || |||||||| || ||| |||| |||||| || Sbjct 394 GAAAAAATTCTGGAATCTCAAATTGAAACCGGAACACCATACATGCTGTATAAAGATGCG 335 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTAC 364244 ||||| || || |||||| | |||| || |||| || || | ||||| ||||| Sbjct 334 GCAAACCGTAAATCAAACCAGAAAAACCTGGGAACAA-TCCGCTCTTCTAACCTGTGTAC 276 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || || || ||||| || || || | ||| ||||||||||| || || ||| | Sbjct 275 AGAAATCATGGAGTACACTTCTAAAGATGAAATTGCGGTATGTAACCTGGCTTCTATCTC 216 Query 364305 GCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA 364364 | || |||||| || | || || ||||| | | |||||| ||||||| | Sbjct 215 ATTGCCAATGTTTGTGGAAAACGGACAGTTCAACCACGAACTGCTTTATAACGTAACAAA 156 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 | || || | || || ||||||| || |||| || |||||||| |||| ||||| Sbjct 155 ACGTGTAACAAGAAACCTGAACAAGGTCATTGACAGAAACTATTATCCGGTTCCGGAAGC 96 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 || ||| ||||||||||| || ||| |||| | || || ||||| || || || Sbjct 95 AGAAAATTCAAATATGCGTCACCGTCCGGTTGGATTAGGGGTTCAGGGTCTGGCAGA 39 Score = 203 bits (224), Expect = 8e-47 Identities = 517/765 (68%), Gaps = 29/765 (4%) Strand=Plus/Minus Query 22196 AACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGA 22255 || ||||||||||| ||||| |||| || |||||| | |||||||||| || ||| | Sbjct 2563 AATATTTTATCAAACATATTTTAGCTTTTTTTGCTGCATCAGACGGTATTGTGAATGAAA 2504 Query 22256 ATCTAGTGACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTG 22315 | || | ||||||| | ||| ||||||| || || || | || |||||| || Sbjct 2503 ACCTGGCAGAGAATTTTGTAAACGAAGTTCAATATCCGGAAGCTAAATTTTTCTACGGAT 2444 Query 22316 TGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCG 22375 | ||||| ||||| || ||| | ||| ||||| |||||| | || | | | | Sbjct 2443 TCCAAATCATGATGGAGAATATCCACAGCGAAACCTATTCTCTTCTGATTGATACGTATG 2384 Query 22376 TAGAAGATAAAGACGAACAACGA--AACTTATTCCGCGCGATTCGCACCATT-CAATCAA 22432 || ||||| ||| ||| || || | ||| |||| ||| || | | ||| | ||| Sbjct 2383 TAAAAGATGAAGCAGAA-AAGGACCAGCTT-TTCCACGCT-TTGGAAGTATTTCCGGCAA 2327 Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA--CG-TTCATTCGCGG 22489 ||||||| || || || ||||| | |||||||| |||| || |||||| || | Sbjct 2326 TTAAGAAAAAAGCGGACTGGGCTTTAAAATGGAT------TGAATCCGATTCATTTGCTG 2273 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 || | || ||||| ||||| | || ||||| || || || || |||||||| ||| | | Sbjct 2272 AAAGACTGATTGCTTTTGCAGCCGTAGAAGGAATCTTTTTCTCAGGAGCATTCTGTTCTA 2213 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 ||| |||| | |||||||||| | | ||||||||||| || ||||||||||| || ||| Sbjct 2212 TCTATTGGTTGAAAAAACGTGGATTGATGCCGGGTCTTACTTTTTCAAATGAATTGATTT 2153 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGC-GTG--TATGCTATATCGGAATCATATCA 22666 || ||||| || | ||| |||||||| ||| | ||| | | | | || || Sbjct 2152 CACGTGATGAAGGCGTACATTGTGATTTTGCAGTGCATTTGC-ACAAC--CACCACCTCG 2096 Query 22667 TTCATAAACTTCCATATG--AAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724 || ||||| || || | | | | | ||| || || | | | || |||| |||| Sbjct 2095 TTAATAAAGTTTCAAAAGCCAGAAT-TAC-AGAAATCCTGGTACAGGCTCTTGATATTGA 2038 Query 22725 ACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784 | | |||||| || | | || || || | ||||| || || || | | ||| Sbjct 2037 AAGAGAATTTATAACAGAATCTCTTCCGGTGAGCTTAATTGGAATGAACGCAAACTTAAT 1978 Query 22785 GAGTACATATA-TTA-AATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 || ||| ||| ||| ||||||| | || | ||||| | | | || | ||||| Sbjct 1977 GA-CACA-ATACTTAGAATTTGTAACCGACAGATTATTAGTAGAATTAGGATGTGCAAGA 1920 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 |||||| | ||||| ||||| | ||||| | || || | | || || || Sbjct 1919 GTGTATAACTCTGCGAATCCGTTTGATTTTATGGATATGATCTCTTTACAGGGTAAAACA 1860 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 ||||||||||||||||||||| ||||| || ||||| || ||| Sbjct 1859 AATTTCTTCGAAAAAAGAGTTTCAGAATATCAGAAAGCTGGAGTT 1815 >seq451 Length=16219 Score = 288 bits (318), Expect = 3e-72 Identities = 943/1450 (65%), Gaps = 33/1450 (2%) Strand=Plus/Minus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 ||||| ||| || || | ||| || |||||| | ||||| | || | ||||| Sbjct 9423 GAGTACGATTACTTTGGGTTTAAAACACTGGAGAGAGGTTACCTTTTCCGCGTGAATGGC 9364 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | | |||||||| || ||||| ||| | ||||| |||||| |||| || ||| Sbjct 9363 AAAGTGGTTGAACGACCCCAGCAAATGATTATGCGCGTTGCTCTTGGGATTCATAAGAGC 9304 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCA 363554 | || | || || | || || || | | | || ||| || | || || || Sbjct 9303 AACATTCAAGCAGCTTTAGAGACGTACGAATTGAT--GT-CTCAAAAGT-TCTTTACCCA 9248 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 || ||||| || ||| |||||||| |||| || || | ||||| || ||| | Sbjct 9247 TGCGACGCCCACGTTGTTTAATGCTGGCACTCCACGGCCGCAATTATCTTCGTGTTTTTT 9188 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 || ||| | || ||||| || || || |||| ||| ||| | ||| | |||||| Sbjct 9187 ACTTGCCATGCAAGATGATTCAATTGAAGGAATCTATGATACATTGAAGCAATGTGCTTG 9128 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 ||| || ||| || || || ||||| | || |||||| | || || |||||| Sbjct 9127 TATCTCAAAGTGGGCGGGAGGTATTGGGATCAGCATGCACAATATCCGAGCTACGAACAG 9068 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| || || || || | || || || | | |||||| | || |||||| | Sbjct 9067 CTACATCCGTGGTACTAACGGGTCTTCCAACGGTATCATCCCCATGTTGCGCGTGTTTAA 9008 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || || |||| || ||||| |||||||| || |||||||| | ||||| || || Sbjct 9007 CGACACGGCTCGGTATGTGGACCAAGGTGGAGGTAAACGCAAAGGTTCCTTTGCAATCTA 8948 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAA 363913 | || || ||||| || | |||||||| || || ||||| ||||| ||||| | Sbjct 8947 CTTGGAACCATGGCATGCAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACGGCAG 8888 Query 363914 AAGAGGAATTGC---GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 ||| ||| | || ||||| |||| || || || ||| | ||||| | || | Sbjct 8887 T----GAACTGCACCGAGCGCGTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCA 8832 Query 363971 TGAAGCGCGTGGAGGCAGGTAAG---AATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 |||| || ||||| | |||| || ||| | ||||| ||| ||||| ||| | Sbjct 8831 TGAAACGAGTGGA---AAGTAATGGCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCCTG 8775 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 |||| | ||| ||||| || || | || | || ||||||| |||||| ||||| Sbjct 8774 GTCTCTACGAGTGCTGGGGAGATGAATTTGAGACCCTCTACGAAACGTATGAGAAGGAGG 8715 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 || ||||| ||||| || || ||| || | |||||||||||| |||| | |||| Sbjct 8714 GACGTGCTCGCAAGACGATCAATGCGCAGCAGTTGTGGTTTGCCATCTTGGACGCACAGA 8655 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 ||||||| || |||| |||| | ||||| || || ||| || |||||||| |||| Sbjct 8654 TTGAGACGGGGGTGCCCTTTATGCTTTACAAGGACGCGGCCAATCGTAAGTCCAATCAGC 8595 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 || | ||||| || || | || ||| | || ||| | || || ||||| ||| Sbjct 8594 AGAATCTTGGCACGATCCGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTC 8535 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG 364327 | |||||| ||| || || ||| | ||||| | ||||| || |||||| |||| | Sbjct 8534 CGGACGAGGTTGCGGTGTGCAACTTGGCGTCAGTGGCGCTGCCCAAGTTTGTGGAAGACG 8475 Query 364328 GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACA 364387 || || || || | || || ||||| ||| | | || |||| ||| ||| Sbjct 8474 GTGTGTTCAACTACAAATTGCTGTACGACGTGACCAAGGTCGTCACCCGCAACCTCAACA 8415 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCAT 364446 | || || ||| || || || || || | ||||| ||| || || ||||| ||| Sbjct 8414 AAGTCATTGACGTCAACTACTACCCGGTTGCAGAAGCTCGA-AAATCCAACATGCGCCAT 8356 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506 || || | || ||||||| || || || || || | |||| | | | || | || Sbjct 8355 CGTCCCGTGGGAATTGGTGTTCAAGGTCTGGCCGATGCTTTTCTTCTCATGAACTTTGCG 8296 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 ||||| || ||||||| || || ||| | |||||||| || || || | || Sbjct 8295 TTTGAAAGTGAAGAGGCTCGTGAACTGAACAAGAACATCTTTGAGACCATCTACTACGCT 8236 Query 364567 GCAAT---GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 | || |||| || | | || ||| ||| | | ||| |||| || | || Sbjct 8235 TCGATGGAGACTTCTATG-GAGA-TTGCCAAGGAAC-TGGGTCCGTACGAGACGTTCCAG 8179 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCT 364680 || |||||| |||| | ||||| ||||| | ||| ||||| || | ||| Sbjct 8178 GGCTCCCCTGCCAGCAAGGGGATCTTCCAATTTGACATGTGGGGTGTCACTCCGTCGTCT 8119 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | | ||| ||||| | | || || | ||||| |||| ||| ||||| Sbjct 8118 GGTCTTTGGGACTGGACCGCCTTGAAGGAGAATGTGATCAAGCACGGTATTCGTAACTCT 8059 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 | | || || ||||| || ||||| ||||| |||||||| || ||||| || | | Sbjct 8058 TTGCTAGTGGCTCCTATGCCAACTGCTTCAACTGCCCAGATCCTGGGCAACAATGAATCC 7999 Query 364801 TTCGAACCGT 364810 |||| |||| Sbjct 7998 ATCGAGCCGT 7989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302760126491498