Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq25614 113 4e-20 seq1997 102 7e-17 seq14623 86.0 5e-12 >seq25614 Length=477 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||| |||||||||| | ||||| | ||||| ||| | Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| || || |||| ||| | | | ||||| || Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || | ||||| ||| | | | |||||||| Sbjct 90 ATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGG 44 >seq1997 Length=5797 Score = 102 bits (112), Expect = 7e-17 Identities = 307/463 (66%), Gaps = 27/463 (6%) Strand=Plus/Plus Query 132821 TACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTG 132880 |||| | |||||||| ||||| ||| || || ||||| |||||| || || Sbjct 261 TACTCCATGATTTCTGTACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTT 320 Query 132881 TTTTTCTCGTTTACGTTATCTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATT 132940 ||| |||| | |||||||| || |||||| || ||||||||| | ||| | Sbjct 321 GATTTACGGTTTGCCGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGAT 380 Query 132941 TCGATAATTTTTCTGTGAAGATCTAACGCCAAAAT--TTGTTCTTTAAACT-TGCCCTGA 132997 || | ||||||| ||| ||| ||| ||| || ||||| || ||||||| Sbjct 381 TCCAGAATTTTTTCCCAAAGTTCTCTTGCCTTAATGGTTTTTCTTC---CTCTGCCCTGT 437 Query 132998 GTCTCGTAACTTTCGTATAAT-CGCT-CAAATTCTTCGCCATAGCAGTCGTTCAAACCGG 133055 || ||| |||||| |||| |||||||||| || || || | | || | Sbjct 438 TCTTCATAAGAA--GTATAAAGCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCG 495 Query 133056 GACACTCGTCAGGACACATCAATGACCATTTT---TCT-CCTGCGCTCACCCTTTTCATG 133111 | || |||| ||||||||||| | |||| | ||| |||| || | ||||||| Sbjct 496 GGCATTCGTTTGGACACATCAACGTCCATGTAGAATCTTCCTGA----ACACGTTTCATG 551 Query 133112 AACAA---CGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCG 133168 ||||| |||| |||||||||||||| |||||||| || || ||| ||||| Sbjct 552 AACAAGTCCGAA---GTCCACATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTTTT 608 Query 133169 CCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATAT 133228 || ||| |||| ||| | ||| |||||| || || ||||| | |||||||| Sbjct 609 CCATGGTTTTTCTTCAGGTCAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATATAG 668 Query 133229 ACGGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACAT 133268 | || ||| ||||| | ||| |||||||| || |||| Sbjct 669 ATAGCAAAACTTCCTTTGCGTTTTCCTCCTCCCTGGTCTACAT 711 >seq14623 Length=969 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || | ||||| | ||||| ||| | Sbjct 718 ATGCAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCG 777 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| |||||||| || || || || Sbjct 778 GACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAG 837 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | || || || |||||||||| | ||| | | || || || Sbjct 838 CAGCGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAAT 897 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| Sbjct 898 ATTCAGAAAGAATCTAC 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429749781148545