Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq8212 141 3e-29 seq1150 102 2e-17 seq31728 96.9 1e-15 >seq8212 Length=1751 Score = 141 bits (156), Expect = 3e-29 Identities = 288/420 (69%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 27424 ACGAGCGCGACCGTGTACCGCGTCTTACGCTCGCTGCCGACATACCGGAACGAGCCATCG 27483 || || || ||||||| ||||| | | || |||||| |||| |||| || ||| Sbjct 1222 ACCAGGGCCACCGTGTGCCGCGCCGTGCGGCTGCTGCCAGCATAGTGGAAACGCCCTTCG 1281 Query 27484 ATCACGTTCGCCGCCGTGTACACGTACACCGGATCTGACGGCATGTCCGCCGATGCGACG 27543 || ||||| ||| |||| |||||| || |||||||| ||||| || | Sbjct 1282 ATGACGTTGGCCTGGCTGTAGGTCAGCACCGGGTCCTTGGGCATGTCGGCCGAGGCCATC 1341 Query 27544 ACAGCTCCCGGCCCCCAGTAGGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACC 27603 || |||| | | || || |||||||||||||| | | ||||||||||||||||| Sbjct 1342 ACCTGCCCCGCCGCATAGAAGCTGATGCCGCGGAACATGGTGGCGATGTCCTGCAACACG 1401 Query 27604 TTGAACGCGTCGGCCGCCGACTG--GAT-CACGCAGTTGCAGGCGAATCGCGGCTCGACG 27660 | || ||||| | ||| ||| || || |||||| ||| |||||||| | Sbjct 1402 CGATAGGCCTCGGCGCGGGTCTGCAGATACAGGC---TGCAGGTGAAGCGCGGCTCCTTG 1458 Query 27661 CCGCCTTTTCCGTCCGACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCAC 27720 ||||| | || || |||| ||||||||||||||||||| | |||||||| |||| Sbjct 1459 CCGCCCTGGCCATCGCTGACCAGTTCATCGCAGTAGCGCGCGATCTGGTACAGCCGCCAC 1518 Query 27721 TTGTCGATCATCGATGCATCG--ACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCA 27778 ||||| | | | | || || || | || || ||| |||| ||||| | | Sbjct 1519 TTGTCCACC--CAGTCCAGCGGAACACGATGGCCCAGGCCGAAGCGATCGTTGGTGACGA 1576 Query 27779 GGTCGTAGAAGATCCACGCGGGATTGTTCGTCCATGCCGGT-TTGAACGTGCCGTCCCAC 27837 |||| |||| | ||| || |||||||| ||||| ||| | ||||| || ||||||||| Sbjct 1577 TGTCGAAGAACACCCAGGCCGGATTGTTGGTCCA-GCCACTCTTGAAGGTACCGTCCCAC 1635 >seq1150 Length=8598 Score = 102 bits (112), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 40974 GCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTG 41033 ||||||| || || ||||| || || || |||| ||| || | ||| |||| | | | | Sbjct 2264 GCGATGATGGAAGCCGCCGAGGCAGCCAGGCCCAGCACCTTGATCGTGACCTCGCCGTCG 2323 Query 41034 TGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTG 41093 ||||| ||||| ||||||||||| | ||| || || | ||||||||| || || ||| Sbjct 2324 TGCTCACGCAGGGTGTTGTAGATCGACAGGCCCTCGAACATGTCGCCGCCTGGGGAGTTG 2383 Query 41094 ACGTTCACCGTGACTTCGCGCGCGCCGATGTTGCGAAGCGCCGCGCTGATCCGCTTCGCG 41153 ||||| ||||| || | | ||| | |||| || || ||| | ||||| | | Sbjct 2384 ACGTTGACCGTCACCGGCCCCTTGCCCAGCGTGCGTAGTGCAGCGGCCACACGCTTGGTG 2443 Query 41154 GTGACGCCGGTGCCCTCCCAGTTGTCG---CCGATGGAGTCGTAGAT 41197 |||||||| ||| ||||| |||| ||||| ||| ||||| Sbjct 2444 GTGACGCCCTCGCCGCTCCAGTAGTCGTAACCGATCACGTCATAGAT 2490 >seq31728 Length=314 Score = 96.9 bits (106), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 3514 CCGCCGCGACCTTCACCTTCACGCGCGCGTCGTCTTGCCAATGCCC---CTTCACCTCGT 3570 |||| || ||||| | |||||| || |||||||||| ||| || || ||||||||||| Sbjct 123 CCGCGGCCACCTTGATCTTCACCCGGGCGTCGTCTTCCCAGTGGCCACCCTTCACCTCGT 182 Query 3571 GCGCCTCGAGCTGGCCGTTCGCGAGCATCACCGTGAAATCGGGCGTGTAGAACGTGTTGT 3630 | || ||||| ||| | || |||| ||| | ||| || |||||||||||||| | Sbjct 183 GGCATTCCAGCTGCCCGCTGGCCAGCAGCACGGCGAAGTCCGGCGTGTAGAACGTCGACT 242 Query 3631 CGGCGAGACGGAACTTGATGCCCTCG-AATCGATACCAGACGATTTCGCCGGCCTGCTTC 3689 ||| || || | ||||| | ||||| | ||| |||| | | |||||||| Sbjct 243 TGGCCAGGCGCAGCTTGAAGGCCTCGTAGGCGA-ACCACAGCACGTCGCCGGCGGCGCGG 301 Query 3690 CGCGCCTCCAG 3700 ||||||||||| Sbjct 302 CGCGCCTCCAG 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143357074097724