Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq17136 473 4e-129 seq13269 470 4e-128 seq6192 132 1e-26 seq19153 111 5e-20 >seq17136 Length=812 Score = 473 bits (524), Expect = 4e-129 Identities = 375/450 (83%), Gaps = 0/450 (0%) Strand=Plus/Minus Query 35442 TGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCCA 35501 ||||||| ||| ||||||||||||| |||||||| |||||| ||||||||||||||| Sbjct 606 TGCAGGTCAAGCTGCTCGACCCGCGCTTCGGCGACAGCTGGCCGCTGCCGGCCTATGCCA 547 Query 35502 CCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGCAGC 35561 |||| |||||||| |||||||||||||| || || ||||| | || |||| |||||| Sbjct 546 CCGAGGCCAGTGCCGGCATGGACCTGCGCGCGGCGCTGGATACCGCGCTGACCCTGCAGC 487 Query 35562 CGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGT 35621 ||||||| | |||||| | ||||||||| | || |||||| | ||||||||| | |||| Sbjct 486 CGGGCGACACCGCGCTGGTGCCCAGCGGCCTGGCCATCCATATTGCCGACCCGAACCTGT 427 Query 35622 GCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACG 35681 ||||||||||||||||||| |||||||| |||||||| || |||||||| || ||||||| Sbjct 426 GCGCGGTGATCCTGCCGCGTTCGGGGCTGGGCCATCGGCATGGCATCGTGCTGGGCAACG 367 Query 35682 GTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCG 35741 | |||||||| |||||||| || ||||||||| || || |||||||| |||||| || | Sbjct 366 GCACCGGCCTGATCGATGCCGACTACCAGGGGCCGCTGCTGATCAGCGTCTGGAACCGTG 307 Query 35742 GCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGG 35801 ||||||||||||||||||||||||||||||| || || |||||||||||| | | ||| Sbjct 306 GCCGCGAGGCCTTCACCATCGAGCCGGGCGATCGCATCGCGCAGCTGGTGGTGGTTCCGA 247 Query 35802 TCGTGCGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGTG 35861 ||| ||||| || ||| || ||||| |||||| |||||||| ||| |||||||||| Sbjct 246 TCGCCCGCGTCAGCCTGCAGGTAGTGGATACTTTCACCGACAGCGTGCGGGGCGCGGGTG 187 Query 35862 GATTCGGTCACACCGGCGTGCGCTGACTGG 35891 ||||||| || ||||| ||||| |||| || Sbjct 186 GATTCGGCCATACCGGGGTGCGTTGACAGG 157 >seq13269 Length=1077 Score = 470 bits (520), Expect = 4e-128 Identities = 371/445 (83%), Gaps = 0/445 (0%) Strand=Plus/Plus Query 35447 GTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCCACCGAA 35506 |||||| |||| || || || |||||||| |||||| ||||||||||||||||||| Sbjct 490 GTGAAGCTGCTGGATCCCCGCTTCGGCGACGAATGGCCGCTGCCGGCCTATGCCACCGAG 549 Query 35507 GCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGCAGCCGGGC 35566 ||||| || || ||||||||||||||||| || ||| ||||| | | || |||||||| Sbjct 550 GCCAGCGCGGGGATGGACCTGCGTGCCGCCCTCGAGTCGCCGCTCGTGCTGGAGCCGGGC 609 Query 35567 GATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCG 35626 || ||||||||| | |||||||||||||| | || |||| ||||||||||||||||||| Sbjct 610 GACGCGGCGCTGGTGCCCAGCGGCATCGCCCTGCACCTGGGCGACCCGCAGCTGTGCGCG 669 Query 35627 GTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACGGTACC 35686 ||| | ||||||||||||||||| ||||| || ||||||||||| || |||||||||||| Sbjct 670 GTGGTGCTGCCGCGCTCGGGGCTGGGCCACCGCCACGGCATCGTGCTGGGCAACGGTACC 729 Query 35687 GGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGC 35746 ||||| ||||| || |||||||||||| || || |||||||| ||||| ||||| | Sbjct 730 GGCCTGATCGACGCCGATTACCAGGGGCCGCTGCTGATCAGCGTGTGGAACCGCGGGCAT 789 Query 35747 GAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTG 35806 ||||||||||||||| ||||||||||||| || || ||| | || | |||||||||||| Sbjct 790 GAGGCCTTCACCATCCAGCCGGGCGACCGCATCGCCCAGGTCATGGTGCTGCCGGTCGTG 849 Query 35807 CGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGTGGATTC 35866 ||||| || ||| ||||||||| ||||||| ||||||||| || || ||||||| ||| Sbjct 850 CGCGTCAGCCTGCAAGTGGTGGATACTTTCGCCGACAGCGCACGGGGGACGGGTGGCTTC 909 Query 35867 GGTCACACCGGCGTGCGCTGACTGG 35891 || |||||||||||||| |||| || Sbjct 910 GGCCACACCGGCGTGCGGTGACAGG 934 >seq6192 Length=2260 Score = 132 bits (146), Expect = 1e-26 Identities = 231/327 (71%), Gaps = 12/327 (4%) Strand=Plus/Minus Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC-GCACTGGAGGCG 35545 |||| ||||| ||||| | || || ||| |||||||||| ||| ||| | || ||| Sbjct 796 TGCCCGCCTACGCCACGCCGGGAAGCGCGGGCCTGGACCTGCGCGCCTGCA-TCGATGCG 738 Query 35546 CCGATGACGTTGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTG 35605 ||| ||||| || |||| ||| | | ||| | |||| ||||| || || | || Sbjct 737 CCGCTGACGCTGGAGCCCGGCCAATGGCAACTGGTGCCCACGGGCATGGCCATGTACCTC 678 Query 35606 GCCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGG 35664 ||||| | ||| || || ||||||||||||||||||| | ||||| ||||| Sbjct 677 AAGGACCC-CGGCTACGCCGCCATGATCCTGCCGCGCTCGGGCATGGGCCACAAGCACGG 619 Query 35665 CATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTG 35722 |||||| || |||||| ||| |||||| |||||| || |||||||| | | || Sbjct 618 CATCGTGCTGGGCAACCTGGT--CGGCCTGATCGATAGCGACTACCAGGGCCAGCTCATG 561 Query 35723 ATCAGCACCTGGAATCG--CGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTG 35780 ||||| ||||||| || ||||| | ||||||||| | |||| ||||| | | Sbjct 560 GTCAGCGCCTGGAACCGCTCGGCCAC--GGCCTTCACGCTGCAGCCCATGGACCGCCTGG 503 Query 35781 CGCAGCTGGTGATCCTGCCGGTCGTGC 35807 | |||||| | ||| |||| || |||| Sbjct 502 CCCAGCTGATCATCGTGCCCGTGGTGC 476 >seq19153 Length=714 Score = 111 bits (122), Expect = 5e-20 Identities = 197/283 (70%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGC 35546 |||||||||| || || | ||| || ||| |||||||||| ||| ||||||| || Sbjct 289 TGCCGGCCTACGCAACGCCCGGCAGCGCCGGCCTGGACCTGCGGGCCTGCCTGGAGGAGC 230 Query 35547 CGATGACGTTGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGG 35606 | ||||| || ||| || | ||| | |||| ||||| || ||||| || Sbjct 229 CCTTGACGCTGGCCCCGAACGCCTGGCAACTGGTGCCCACGGGCATGGCCATCCACCTCA 170 Query 35607 CCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGC 35665 |||||| || ||| ||| | ||||| || || || || ||||| || |||||| Sbjct 169 AGGACCCGGC-CTATGCCGCGCTCATCCTTCCCCGTTCAGGCCTTGGTCACAAGCACGGC 111 Query 35666 ATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGA 35723 ||||| || |||||| ||| |||||| ||||| || |||||||| | || || Sbjct 110 ATCGTGCTGGGCAACCTGGT--CGGCCTGATCGACAGCGACTACCAGGGCCAGCTGATGG 53 Query 35724 TCAGCACCTGGAATCGCGGCCGCGAGGCCTTCACCATCGAGCC 35766 ||||| ||||||||||| || || | | |||||| | |||| Sbjct 52 TCAGCGCCTGGAATCGCAGCGACGTGCCGTTCACCCTGCAGCC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149073060786390