Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7414 136 4e-27 seq19645 118 1e-21 seq25614 116 3e-21 seq14623 109 5e-19 seq34320 105 6e-18 seq28136 105 6e-18 seq31347 100 3e-16 seq20474 100 3e-16 seq121 93.3 4e-14 seq2166 84.2 2e-11 >seq7414 Length=1926 Score = 136 bits (150), Expect = 4e-27 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 131011 CCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATG 131070 ||||||| ||| ||||| | || | ||||||||||| ||||||||||| ||||||| Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| ||||| ||||||||||| ||| | || |||||||||||||| ||||| || Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 ||||| ||||| || ||| ||| | | || | | || | ||||||| ||| Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCA 180 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTATTCCT 131250 | || | || || || || | || || |||||||||||||| ||| | || || || Sbjct 181 AGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCAT--CTTGTCTTGTTGCT 238 Query 131251 TCCT 131254 | || Sbjct 239 TTCT 242 >seq19645 Length=690 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | |||||||||||| || |||||||| || | | Sbjct 574 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC-CGC 516 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | ||||| ||||| |||||||| || || |||| | | ||||||||||||||| Sbjct 515 AAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGG 456 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || |||| | ||| | Sbjct 455 AATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCAC 396 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| ||| | ||| || ||||| || || || ||||| ||||||||| || Sbjct 395 CTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATGCCT 344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| | || | |||||||||||| || ||||| || || | ||||| ||| Sbjct 331 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCC 272 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || ||| | || | | |||||||||||| || || ||||| ||||| Sbjct 271 TCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 212 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| ||| ||||| | || | || |||| | ||| | |||| || | ||| Sbjct 211 TGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTC 152 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || || || ||||| |||||||| Sbjct 151 TTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 >seq25614 Length=477 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCG 131077 ||| ||||| ||||| | |||||| ||||||||||| |||||||| || ||| | || Sbjct 55 ACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCC 114 Query 131078 AGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTT 131137 | ||||| |||||||| || ||| |||| | | ||||||||| || || |||||||| | Sbjct 115 A-TCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCT 173 Query 131138 TGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 |||| ||| || ||||| | || | || || | | ||| | || | |||| Sbjct 174 TGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAA 233 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || ||||| |||||||| || || |||||| Sbjct 234 TTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | |||||| || || | || | ||| || || || || |||||||||||| Sbjct 271 GCCACCCCTCAAACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGC 330 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| |||||||| |||||| |||| | |||||||||||| || || Sbjct 331 AAGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGG 390 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| ||||| ||| || |||| | | | || | || || | | ||||| Sbjct 391 GATCCCTTCCTTGTCCTGGATCTT-AGCTTTAACATTGTCAATGGTGTCAGAGCTCTCGA 449 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAG 131213 |||| || | ||| |||||||| || Sbjct 450 CTTCGAGAGTGATGGTCTTACCGGTGAG 477 >seq14623 Length=969 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| || || || || |||||||||||| Sbjct 717 GCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGC 658 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| |||||||| || || ||||||||||||||||||| || || Sbjct 657 AAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGG 598 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| || ||||| | || | |||||| | | ||| | Sbjct 597 AATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAAC 538 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 537 TTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| || || | ||| | ||| || ||||||||||| ||||| || | Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || |||||||| || || | || | ||| |||||||| || ||| Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || || | | || | ||||| | | ||| | Sbjct 368 ATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACT 309 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || ||||| || || ||||| ||||| ||||||||| Sbjct 308 TCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCATG 261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | ||| | ||| || || || ||||| ||||| || Sbjct 945 GCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGC 886 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||| || || || |||| | ||||||||||| || || Sbjct 885 AAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 826 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || || ||| | | || | || || | | ||| | Sbjct 825 GATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCAC 766 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||| ||||| ||||| ||||| || || ||||||||| Sbjct 765 TTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATG 717 >seq34320 Length=242 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 || || |||||||| ||| || ||| || ||||| ||||||||||| ||| |||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 | | |||||||||||| ||||| ||||| ||||| ||| || ||||| | || Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | || |||| | ||||| |||| || | ||| || ||||| || || || ||||| Sbjct 121 ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 180 Query 131227 ATCTGCAT 131234 |||||||| Sbjct 181 ATCTGCAT 188 >seq28136 Length=407 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| | || | ||| ||||| || |||||||||||||| || ||||| || Sbjct 224 CAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATC 165 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || | ||||||||| || | || | ||| |||||||| || ||||| ||||||||||| Sbjct 164 TTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTC 105 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| ||| | | || | |||||| || || | || | ||| | ||| Sbjct 104 CTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGT 45 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || |||||||| |||||||| Sbjct 44 CTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 12 >seq31347 Length=324 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | |||||| ||||| |||||||||||||| Sbjct 185 GCCACCACGGAGGCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGC 244 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||||| |||||| |||||||| || ||| |||| | | |||||||||||| || Sbjct 245 AAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGCGG 304 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 305 GATCCCCTCCTTGTC 319 >seq20474 Length=655 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||| || || | || | ||| |||||||| |||||||| || ||| Sbjct 97 GCCTCCCCTCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGC 156 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || |||||||| || || |||| | | ||||||||| || || Sbjct 157 CAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGG 216 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||| | | || | ||||||| | ||| | Sbjct 217 GATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCTAC 276 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || ||||| || || || || || ||||||||||| Sbjct 277 CTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 324 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || | || | || |||||||| || || ||||| || | Sbjct 326 CCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCC 385 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| | | |||||||||||| ||| Sbjct 386 AAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 445 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || |||| | ||||| Sbjct 446 ATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACC 505 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 506 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 552 >seq121 Length=30622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||| || || ||||||||||| | Sbjct 21084 CCACCACGCAGACGCAGCACGAGGTGCAACGTCGACTCTTTCTGGATGTTGTAATCCGCC 21143 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | ||| || || ||||||||||| ||| |||| | |||||||||||| || || Sbjct 21144 AGAGAGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGA 21203 Query 131128 ATTCCT 131133 |||||| Sbjct 21204 ATTCCT 21209 >seq2166 Length=5462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || | || | ||||||||||| || || || ||||| || Sbjct 809 TCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTT 868 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCA--CAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || |||||||||||||| | || | ||| |||| | ||| | ||| | || | Sbjct 869 TCCTGGATTTTCTGCTTGACATTGTCAATGCAG--TCGGACGGCTCCACGTCCAACGTGA 926 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 ||| || ||||| || || || || || |||||||||| Sbjct 927 TGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGA 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471803114213760