Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14623 93.3 3e-14 seq19645 87.8 1e-12 seq7414 87.8 1e-12 >seq14623 Length=969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||||||||| ||||| || || ||||| ||||| | |||| | | || Sbjct 245 AGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCT 186 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || || |||||||||||| || | ||| || || || Sbjct 185 TCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCC 126 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | ||||| | ||| ||| | ||||||| Sbjct 125 TGGATTTTTGC--CTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGG 68 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || |||||||| || || ||||| || Sbjct 67 TCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| ||||| || || || |||||||| ||||| | |||| | | ||| Sbjct 701 AGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCC 642 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | || | ||||| ||||| || | |||||||||||| Sbjct 641 TCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 582 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||| || | ||| ||||| |||||| | Sbjct 581 TGGATCTTGGC--CTTGACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCG 524 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || ||||| |||||||||||||| Sbjct 523 TCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq19645 Length=690 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || || |||||||| || ||||||||||| | Sbjct 576 ACCCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 517 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | || | | ||||| | || || || ||| | || |||| ||| |||||| || Sbjct 516 CAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAG 457 Query 16827 GCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 | | ||||| ||||| || ||||| ||| || | | | |||||| | ||| Sbjct 456 GAATCCCCTCCTTGTCCTGGATCTTTGC--CTTGACGTTATCGATCGTGTCGGAGCTCTC 399 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||| ||||| || ||||||||||| || || || |||||||| Sbjct 398 CACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 348 >seq7414 Length=1926 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || |||||||||||| || || | | ||||||| || Sbjct 22 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGC 81 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| | ||||| ||||| ||| | ||| || ||||| ||| | | Sbjct 82 TTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC 141 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | | ||| | ||| || | ||||| || || || ||| Sbjct 142 GTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTC 201 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTGT 16940 | ||| || || ||||||||||| |||| Sbjct 202 AACGTCTTCACGAAAATCTGCATCTTGT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404912543601610