Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14623 123 2e-23 seq25614 122 8e-23 seq32362 113 4e-20 seq28136 109 5e-19 seq27836 104 2e-17 seq2166 102 7e-17 >seq14623 Length=969 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || ||||||| | ||||| ||| ||| Sbjct 34 ATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCT 93 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||||||| || || ||||| ||||| || |||| Sbjct 94 GACACCATTGA--CAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGACC 151 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || ||||| || || || | ||||||| || || | | |||||||| Sbjct 152 AACAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACA 211 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || ||||||||||| ||| | || || Sbjct 212 ATATCCAGAAGGAATCCACGCTGCATCTTGTCCT 245 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || ||||| |||| || | ||||||||| || Sbjct 718 ATGCAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCG 777 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 778 GACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAG 837 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| | ||||||| || || | | || |||||| Sbjct 838 CAGCGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAAT 897 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| || | ||| | || || | || ||||| || Sbjct 898 ATTCAGAAAGAATCTACCTTGCATCTTGTCCTCCGTCTGAGAGGTGG 944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || | ||||| | ||||| ||| || Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| |||||||| || ||||| |||||||| Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || |||| | | || | | ||||||||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||||||||| Sbjct 670 ATCCAGAAAGAATCCAC 686 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| ||||| | || || | ||||| ||| || Sbjct 262 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCG 321 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || |||| || | || ||||| ||||| || || |||||| Sbjct 322 GATACCATTGA--CAATGTAAAAGCCAAGATCCAG-GACAAGGAAGGAATCCCGCCTGAC 378 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || |||||||| || || | ||||| | || || ||| || ||| Sbjct 379 CAGCAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTAC 438 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| ||||| || || ||| | || || Sbjct 439 AATATTCAAAAGGAATCAACCCTGCATCTCGTCCT 473 >seq25614 Length=477 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || | || ||| | ||||| ||| || Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| || || || || || | || |||| | || ||| ||||||||| Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || || ||||| ||||| | ||||||||||| Sbjct 90 ATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGG 44 >seq32362 Length=298 Score = 113 bits (124), Expect = 4e-20 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || || | |||||| | || || ||| || Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 25059 GACACTATCGAGTCACTGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || || || |||| ||| ||||| ||||||||||||||||| | Sbjct 66 GATACGATTGA-TAACGTAAAAGCGAAAATTCAG-GACAAGGAAGGGATTCCACCTGATC 123 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || ||||| | || |||| || ||| ||| |||||| | Sbjct 124 AGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATA 183 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || ||||| || || || Sbjct 184 ACATCCAGAAGGAATCTACACTTCA 208 >seq28136 Length=407 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| |||| || || |||| || | ||||| || Sbjct 12 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGCAGC 71 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| |||||| |||||||||||||| || || ||||| Sbjct 72 GATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGACCAG 131 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || || ||||||| |||||| ||| |||||||| Sbjct 132 CAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTACAAC 191 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| ||||| || || | || | ||||| ||||| Sbjct 192 ATTCAGAAAGAGTCAACCTTGCACCTTGTGCTGAGGCT 229 >seq27836 Length=415 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25044 GAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGG 25103 |||||||| || ||||| || || ||||| || ||| ||||| || || Sbjct 3 GAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGA 62 Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 |||||||||||||| ||| || | || |||||||| || || | ||||||| ||| ||| Sbjct 63 ATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACT 122 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||||||||||||| || ||||| || || || | ||||| Sbjct 123 CTGGCCGATTACAATATTCAGAAGGAATCGACCCTTCACCTGGTGCT 169 >seq2166 Length=5462 Score = 102 bits (112), Expect = 7e-17 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || |||||| |||| Sbjct 963 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGTTGGACGTGGAGCCGTCC 904 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || || ||||| |||||| || || ||||| ||||| ||||||| Sbjct 903 GACTGCATTGA--CAATGTCAAGCAGAAAATCCAGGAAAAGGAAGGTATTCCGCCTGACC 846 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||||||||| || | || |||| || || | || |||| Sbjct 845 AGCAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGAACGCTTTCGGACTACA 786 Query 25177 ATATTCAAAAAG 25188 | || || |||| Sbjct 785 ACATCCAGAAAG 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433140311966285