Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq14841 87.8 2e-12 seq12193 84.2 2e-11 >seq14841 Length=953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 162269 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTG 162326 ||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct 30 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 87 >seq12193 Length=1180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 106528 GGCGCTGGTCACTTCGTAAAGATGGTGCATAATGGAATCGAATACGGAATCATGCAAGCA 106587 ||||| || |||||||| |||||||||||||| || |||||||| ||| ||||| ||| Sbjct 697 GGCGCCGGCCACTTCGTCAAGATGGTGCATAACGGCATCGAATATGGAGTCATGGCAGCT 756 Query 106588 TATGCAGAAGGATTTAATATCCTG 106611 ||||| ||||| || || || ||| Sbjct 757 TATGCCGAAGGCTTAAACATACTG 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566980014274400