Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1997 300 2e-76 seq195 145 8e-30 >seq1997 Length=5797 Score = 300 bits (332), Expect = 2e-76 Identities = 623/904 (69%), Gaps = 34/904 (4%) Strand=Plus/Plus Query 92793 AACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAA 92852 ||| ||| ||| || ||||| |||| ||||||| ||||||||||| || || | || Sbjct 1815 AACTCCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAA 1874 Query 92853 AGATATCGAATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTT-CACCGATC- 92908 ||| ||| || || | | |||||| | |||||| ||| || ||| ||| Sbjct 1875 AGAGATCATATCCATAAAATCAAACGGATTCGCAGAGTTATAC-ACTCTTGCAC--ATCC 1931 Query 92909 -AACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 || || ||| |||||||| || | ||||||||||| ||| || | ||| || | | Sbjct 1932 TAATTC-TACTAATAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGT 1990 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 ||||||| | | | || || |||| || || | || ||| | || || ||| | Sbjct 1991 TCATTCCAATTAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAG 2050 Query 93027 CTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT---TGT 93083 | | | || ||||||| | | ||| |||| ||| | |||| | | ||| Sbjct 2051 CCTGTACCAGGATTTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGT 2110 Query 93084 ACATTAAGCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 || | |||| ||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 2111 GCAA-ATGCACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAA 2169 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA--CTAC 93200 || || | ||| || | || ||| ||||| || | |||| | || ||| || || || | Sbjct 2170 AAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAA-CAGAATGCT-C 2227 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || ||||| || ||||| ||||||||||| || | | | ||| ||||| ||| Sbjct 2228 CTGAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAATCGG 2287 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | ||||||||||||||||| || |||||||||||||| || | | || Sbjct 2288 ATTCA------ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTT 2341 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | | ||||| || || | || || | |||| || || ||||| || | | Sbjct 2342 CCAAAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAA 2401 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 ||||||| |||| |||| ||||||||| |||||||||||||||||| || ||| Sbjct 2402 GAGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAG 2461 Query 93441 CTTCCGTGAT-CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 |||||| ||| || ||||| || | ||||| ||||| | || |||||||| || ||||| Sbjct 2462 CTTCCG-GATATTGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAATACC 2519 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || ||||| ||||||||||| || ||||| || ||||||| ||||||||||| || || Sbjct 2520 GTCTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAG 2579 Query 93559 CTTA---TCCCAATCGGATAGAT-CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 |||| | ||| || |||| || || || || ||| | ||||||| |||||||||| Sbjct 2580 CTTATTGTTCCAGTCTGATAAATCCTGGTGCAA-ATCAATTTCTTCGGCAGTCCAAAAAC 2638 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 |||||| ||| || ||| ||||| || || || | || || || || || || | Sbjct 2639 TTGCTTCCATTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAATCACGA 2698 Query 93675 AACG 93678 |||| Sbjct 2699 AACG 2702 >seq195 Length=24554 Score = 145 bits (160), Expect = 8e-30 Identities = 427/641 (67%), Gaps = 34/641 (5%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTG 93139 |||||| | ||| |||||||||||||| | ||| || || || ||||| | |||||| Sbjct 23301 GTACATGAGGCAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATA--AGCTCATTC 23244 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || | | ||| || | || || |||||||| ||||| || || || ||| || | Sbjct 23243 GAAAAGCTGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGA-GCAGAAGGA 23185 Query 93200 -CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||||| || || ||||| ||||| | || || || | || ||| || || | || Sbjct 23184 GCCAGAGAAGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTA---TGA 23128 Query 93259 GGAATTACTGCTGATC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 || || || | || || || | |||||| ||||||| ||||| | ||| || | Sbjct 23127 CGACACAC-GCGGGTCACACCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGA 23069 Query 93315 GTGTTTCGATAGCGTTAA---ATAGGTAATCTCGCT----CGTCCGAATCTCGTATGTAT 93367 || || || || | | |||| | || || ||||| | | ||||| Sbjct 23068 TAGTGTCAATGGCACGCAGCAAAAGGTCCT-TCTCTACAGCGTCC-----TTG-ATGTAC 23016 Query 93368 GTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCG 93427 || || || | || ||||| | || || || | ||||| || ||||| || || ||| Sbjct 23015 GTGTCAATGAGTAGCGAATAGACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCG 22956 Query 93428 TAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTC 93486 |||||||| | |||||| | | ||||||||| ||| || | || | || ||||| Sbjct 22955 TAGAAACACCGAGCTTCGGGAACCTGCACTTCGTTGCTGAAGT-TCATGGCCAGGTTTTC 22897 Query 93487 ATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTC 93546 ||| || || ||||| |||||||| || || | | |||||| ||||| || ||| Sbjct 22896 ATTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTC 22837 Query 93547 ATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA--AGATCGACTTCTTCGACA 93604 | || | || || | |||||| || || | || | ||||| | || || | Sbjct 22836 GTTGTCAGTGAGGTTTTTCCAATCTT-TA-ATGTCGTGCACCAGATCCAGCTCCTCAGCC 22779 Query 93605 GTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||||||||| || || ||||| |||||||| | ||| | || | | ||||| || Sbjct 22778 GTCCAAAACGAGGCCTCAGCTTTCTTGTACATCTGCCAGACATCATTCTCCTGAATCGGG 22719 Query 93665 AATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || | |||||||| || ||||| || || |||||||| Sbjct 22718 AAGAGTACAAAACGGTTGGGGTTCTCCACAAGGAACGGCTC 22678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556613421550360