Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14623 140 3e-28 seq28136 114 1e-20 seq20474 114 1e-20 seq25614 109 5e-19 seq2166 104 2e-17 seq31848 100 2e-16 seq7414 100 2e-16 seq19645 87.8 2e-12 seq27836 82.4 6e-11 >seq14623 Length=969 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || |||||| | ||||| || || ||||||||||||| || | | Sbjct 31 AAGATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGC 90 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || | || |||||| || || ||||| || ||||| || || Sbjct 91 TCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGAC 150 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| |||||||| || || ||| | || ||| ||| ||| | |||||||| Sbjct 151 CAACAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTAC 210 Query 22396 AACATTCAAAAAGAATCCAC 22415 || || || || |||||||| Sbjct 211 AATATCCAGAAGGAATCCAC 230 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||||||||| | || || || ||| |||| | ||||| || | | | Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || || || ||||| ||||| ||||| || || || Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || ||| | |||||| | ||| | ||||||||||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 670 ATCCAGAAAGAATCCACC 687 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || ||||| ||| | || | ||||| || | | | Sbjct 262 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCG 321 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | ||| || || || |||||||| || || || || || || Sbjct 322 GATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 381 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| ||||||||||| || ||| | || || ||| ||| | | || ||||| Sbjct 382 CAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAAT 441 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||| | ||| | || | || ||| | || ||| Sbjct 442 ATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGT 489 >seq28136 Length=407 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || || | || | ||||| |||| | Sbjct 9 AAGATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGC 68 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | ||| || | || ||||| || ||||| || || || || ||||| Sbjct 69 AGCGATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGAC 128 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||||| |||||||| ||||| ||||| || ||| ||||| | | |||||| Sbjct 129 CAGCAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTAC 188 Query 22396 AACATTCAAAAAGAATCCACC 22416 |||||||| ||||| || ||| Sbjct 189 AACATTCAGAAAGAGTCAACC 209 >seq20474 Length=655 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || ||||| || ||||||| || || || | | || Sbjct 324 ATGCAGATTTTTGTGAAGACCCTCACTGGTAAGACAATCACTCTCGAGGTAGAGAGCTCC 265 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || |||||||||||||| || ||||| || || Sbjct 264 GATACAATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 205 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| ||||||| | |||| || ||| Sbjct 204 CAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGCACCTTGGCCGACTATAAC 145 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 144 ATTCAGAAGGAGTCCACC 127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || ||||| || | ||||| || || |||| ||||| || || | | Sbjct 555 AAGATGCAAATCTTCGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGAGC 496 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | || || || || ||||||||||| || || || || Sbjct 495 TCCGACACAATCGATAATGTAAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAC 436 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || || || || || ||| | || ||| ||||||| | | || ||| Sbjct 435 CAGCAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTAC 376 Query 22396 AACATTCAAAAAGAATCCAC 22415 || || || || || ||||| Sbjct 375 AATATCCAGAAGGAGTCCAC 356 >seq25614 Length=477 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || ||||||| ||||| || | | | || ||| | ||| || | ||| Sbjct 474 ACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAAGCT 415 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || || || ||||| || || ||||| || || || || || Sbjct 414 AAGATCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGAAAG 355 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||| ||| | ||||||||||||| || |||||||| ||| | || Sbjct 354 CAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCTCCAC 295 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | ||| | || ||| | || || Sbjct 294 CTTGTTCTCCGTTTGAGGGGTGG 272 >seq2166 Length=5462 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| | || ||||| | || Sbjct 963 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGTTGGACGTGGAGCCGTCC 904 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || |||| || ||||| || || ||||| |||||||| || || || Sbjct 903 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGAAAAGGAAGGTATTCCGCCTGACCAG 844 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||| || | || || |||||| Sbjct 843 CAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGAACGCTTTCGGACTACAAC 784 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 783 ATCCAGAAAG 774 >seq31848 Length=311 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| |||||||| || ||||| || | || || |||||||| || Sbjct 40 AAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGAGACTCATCTTTGCCGGGAAG 99 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| || || ||||||| ||||| || || ||||| ||| | || Sbjct 100 CAGCTGGAGGATGGCCGAACACTCGCCGATTATAACATCCAGAAGGAATCAACCCTCCAC 159 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || ||||| |||| || || Sbjct 160 CTTGTCTTGCGTCTGCGTGGTGG 182 >seq7414 Length=1926 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || || || || || ||| |||||||||| || || | Sbjct 227 AAGATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCG 168 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || ||||| |||||||| || ||||| || || Sbjct 167 TCGGACTCGATCGACAACGTGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCTGAC 108 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || |||||||| ||| | |||||| |||||| | ||| ||| Sbjct 107 CAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGTTGAGCGACTAC 48 Query 22396 AACATTCAAAAAGAATCCAC 22415 |||||||| || || || || Sbjct 47 AACATTCAGAAGGAGTCGAC 28 >seq19645 Length=690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || || || ||||| | | || Sbjct 348 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTCC 407 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| || || ||||||||||| ||||| || || || Sbjct 408 GACACGATCGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCAG 467 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | |||||| |||||| | | || |||||| Sbjct 468 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAAC 527 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 528 ATCCAGAAGGAGTCGACC 545 >seq27836 Length=415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 |||||||||| | | || ||| | ||| || | || || || || ||||||||||| Sbjct 3 GAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGA 62 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 |||||||| || || || | | || |||||||| || ||| | || ||| || || Sbjct 63 ATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACT 122 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | |||||||||| ||||| || ||||| ||| Sbjct 123 CTGGCCGATTACAATATTCAGAAGGAATCGACC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419546202555535