Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq195 168 1e-36 seq79 132 1e-25 seq7057 93.3 9e-14 seq558 91.5 3e-13 seq16652 87.8 4e-12 seq13236 84.2 4e-11 seq88 84.2 4e-11 >seq195 Length=24554 Score = 168 bits (186), Expect = 1e-36 Identities = 549/839 (65%), Gaps = 18/839 (2%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 |||||| |||||| || ||||| || | |||||||| || ||||| | ||||| Sbjct 23576 TATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCATGTCCATC 23517 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGC 251662 ||||||| ||||| || | | ||| ||| | || | || ||| | ||| | Sbjct 23516 CAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAATGAGTACAGCAGA--C 23459 Query 251663 GGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGAC 251722 |||| ||||| ||||| | ||||| | ||| || ||||||||||| || | | Sbjct 23458 GGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGATGAGCTCAA 23399 Query 251723 AAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT 251782 ||| | | ||||| | || || | ||| | || || || || | || | | Sbjct 23398 CAGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTCACGAATGATCTCGT 23339 Query 251783 TCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTT 251842 ||| | | | |||||| || |||| || ||||||| ||| | |||| || Sbjct 23338 GCACACGACTCTCCGGCAGCTTATTGACCAGTTTGGAGTACATGAGGCAGGCAAA--GTC 23281 Query 251843 GGT--GCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCAC 251900 ||| ||| |||||| || |||||||| | ||| || || | | || |||||||| | Sbjct 23280 GGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGACCAGGCATGAG 23221 Query 251901 CCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||| ||| | ||||||||||| | ||| ||||| |||||||| | | |||||| || Sbjct 23220 ACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATACCCTCCAC 23161 Query 251961 ACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGC--GACA-AGAACTTCTG 252017 | | | |||| ||| ||||| || | ||| | || | || | |||| | Sbjct 23160 TGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTCACACCACTTGAG 23101 Query 252018 TGCCCATGCTGCCTTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGT 252076 |||||| || || ||||| | || | | ||||| || || || ||| | || | || Sbjct 23100 TGCCCAAGCGGCTTTCTTCTTCACACAC-GGGATAGTGTCAATGGCA-CGCAGCAAAAGG 23043 Query 252077 TCC-GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGG 252135 ||| ||| || |||||| |||| || |||| || || || || | |||||| || Sbjct 23042 TCCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGCGAATAGACCTCCGAGTGA 22983 Query 252136 ATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCC 252195 ||| ||| | ||||| || | ||||| || || || | ||||| Sbjct 22982 ATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGGAACCTGCACTTCG 22923 Query 252196 GTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCA 252255 || ||||| | || | ||| || |||| |||||||| ||| ||||||||||| | Sbjct 22922 TTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTGGCTGCAAAGAAGGCG 22863 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 || | |||||| ||||||||||| | ||| |||| || | ||| || |||| Sbjct 22862 AGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTT---TCCAATCTTTAATG 22806 Query 252316 TCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || |||| | || || ||||||| || | || | | || ||||||||||| Sbjct 22805 TCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCTTTCTTGTACAT 22747 >seq79 Length=34262 Score = 132 bits (146), Expect = 1e-25 Identities = 438/670 (65%), Gaps = 36/670 (5%) Strand=Plus/Minus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| || ||||||||||||||||| ||| || | || ||||| || | | || | Sbjct 20582 CTCTTTCTGGTGGTTGGAAGATGAAATTGGAGCTGGCCCGTGCCATGCTTCAGAAGGCTG 20523 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | || | || || |||||||| || |||||| ||||| | ||||| || ||| | | Sbjct 20522 ACATCTTGCTTCTCGATGAGCCGACGAACCACTTGGACGTGAAGAACGTGGCGTGGTTGG 20463 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 | |||||| || ||| ||| |||||| | || |||| || || ||||||||||||| Sbjct 20462 AGAACTACCTGACGAGTTTGACGAATGTGACGTCAATCATGGTGTCCCACGACTCTGGCT 20403 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCA 279939 || | || | |||||| | ||| |||||||| ||| | || |||||| ||| || Sbjct 20402 TCTTGGACACGGTGTGCACCAACATTATTCACTACGAGACTCGTAAGCTGAAGATCTACA 20343 Query 279940 AGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATG 279999 || || ||||| || || |||| | || || ||||| || ||||| | Sbjct 20342 AG------GGAAACCTTTCAAAGTTTGTGGAACAGAAACCGGAGGCCAAGGCATACTACG 20289 Query 280000 ACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC- 280058 | ||| || | | || |||| ||||| ||||| || || || | | |||| Sbjct 20288 AGCTGGAGTCAGAGAACGTGAAGTTCACTTTCCCGGAGCCGGGTTTCCTTGCTGACATCA 20229 Query 280059 ACATCAAAGGATCGCGCAATCAT---------GAA--GCTCCGTGGCGTCTCCTTTGCTT 280107 | | ||| || || | || || ||| ||| ||| | || | || Sbjct 20228 AGAACAAGGGCAAGC-CTATTATTCGTCTGACGAACTGCT-CGTACCAGTACCCTGGC-- 20173 Query 280108 ATCCCAATGGC-CCCAACATCTTCAGCAGTGTCAACT-CGCAGGTTTCTATGAACTCACG 280165 | || | | | | | || | || ||| | | ||| ||| | | | || Sbjct 20172 ACGCCGAAGCCGTCGATCAACAACATTTCTGTGACGTGCGC-----TCTGTCGAGT--CG 20120 Query 280166 GATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGG 280225 |||| ||| | || || |||||||| |||||||| || || ||||| | ||||||| Sbjct 20119 TATTGCTGTTCTGGGTCCGAATGGTGCTGGTAAGTCGACGCTGATCAAGATGTTGACTGG 20060 Query 280226 CGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 |||| || | || ||| || | || |||||||| || ||||| | || || | Sbjct 20059 CGAGGTTGAGCCGAC-GAGCGGACAGGTGTGGAAGCACCCTTCGATGCGTTTTGCGTATG 20001 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 | ||||||||||||||||||||||| ||| || |||| ||| | || || |||| Sbjct 20000 TTGCTCAGCACGCTTTCCACCACATTGAGTCTCATTTGGATGAGACGGCGAATCAGTACA 19941 Query 280345 TTCAGTGGCG 280354 |||||||||| Sbjct 19940 TTCAGTGGCG 19931 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 |||| || |||||||| || || ||||| | |||||| | ||| | || || Sbjct 20921 ACTGCGAGTTCTCGCTTGCCTACGGTGGTATGATTCTTTTGAACAACGCTCGTCTTCGTC 20862 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 |||||||||| |||| || ||| | ||||| ||||| |||||| || || | Sbjct 20861 TCAAGCGTGGTCACCGTTACGGTTTGTGTGGTCCGAATGGTTGCGGTAAGTCTACGCTTA 20802 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGAGGTAAGGACA 279539 ||||||||||| | ||||| ||||| || ||||| || | ||| | ||| | | ||| Sbjct 20801 TGCGCGCCATTTCGAACGGGCAGCTAGAGGGATTCCCGAGCCGCGAC-GAGCTGAAGACT 20743 Query 279540 GTGTATGTAGAGCACGAC 279557 |||| ||| |||||| || Sbjct 20742 GTGTTTGTTGAGCACAAC 20725 >seq7057 Length=2016 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 1956 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCCTGTGGTCGTGGGCTCGAG 1897 Query 142563 CCCCAC 142568 |||||| Sbjct 1896 CCCCAC 1891 >seq558 Length=14456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || |||||||| || || || |||| ||| |||| |||||||| ||||||||| Sbjct 682 GCGCTCTTCCTGGGCCGTGGCATCCACTACCCGATTGCGCTGGAAGGCGCGCTCAAGCTC 741 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829 ||||| ||||| ||||||||||| |||| | |||| ||||| || |||||||| || Sbjct 742 AAGGAAATCAGCTACATCCACGCCGAGGCCTATCCGGCCGGCGAGCTCAAGCACGGCCCG 801 Query 19830 CTTGCTCT 19837 || || || Sbjct 802 CTGGCCCT 809 >seq16652 Length=838 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || || ||||| || || || || ||| ||| | || |||||| | ||||||||| Sbjct 22 GCGCTGTTCCTGGGCCGTGGCCTGCATTACCCGATCGCGCTGGAAGGCTCGCTCAAGCTC 81 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829 |||||||| || |||||||| |||| ||||||| ||||| |||||||| || Sbjct 82 AAGGAGATTTCCTATATCCACGCCGAGGCCTACCCGGCAGGTGAACTGAAGCACGGCCCG 141 Query 19830 CTTGCTCTTCTCAACAAGCCTGTTCCGGTTGTAGTG-TCTCTGGCAGACCACAGTTGCCT 19888 || || || | || || | ||||| || ||| || | || || |||| || Sbjct 142 CTGGCGCTGGTGGACGAGGACATGCCGGTGGTGGTGATCGCCCCCA-ACGACAGCCTGCT 200 Query 19889 GGATAAGCTAAAGTCAAACATCGACGAAGTGCTTGCCCGTGG 19930 ||| ||| | ||||| ||||| | ||||||| |||||||| Sbjct 201 GGAGAAGGTGAAGTCGAACATGCAGGAAGTGCGCGCCCGTGG 242 >seq13236 Length=1080 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||||||| |||| ||||||||| ||||||||||| | || |||| | |||||||||| Sbjct 205 GGTGAGAAGACCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTG 264 Query 142555 GGTTCGAGCCCCAC 142568 |||||||||||||| Sbjct 265 GGTTCGAGCCCCAC 278 >seq88 Length=33454 Score = 84.2 bits (92), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 19752 GAAGGCGCCCTCAAGCTCAAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGC 19811 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| ||| Sbjct 4002 GAAGGCGCGCTCAAGCTCAAGGAAATCAGCTACATCCACGCCGAGGCCTACCCGGCCGGC 4061 Query 19812 GAACTTAAGCACGGGCCTCTTGCTCT 19837 ||||| |||||||| || || || || Sbjct 4062 GAACTCAAGCACGGCCCGCTGGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027368781258299