Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq12647 127 5e-25 >seq12647 Length=1134 Score = 127 bits (140), Expect = 5e-25 Identities = 282/409 (69%), Gaps = 37/409 (9%) Strand=Plus/Minus Query 11035 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACTGG 11094 ||||||||||||||||||||||||||||||||||||| | || |||| | | |||| Sbjct 882 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGACCGGACGGC---CGAGCGCTGG 826 Query 11095 CAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCGCA 11154 |||||| | ||| || | | || || |||| || | | ||| ||||| Sbjct 825 CAGGGCATGGCGCCGGACCAATCAGGGGACG---CGCGCTTTGTCGTGTTC---ACCGCT 772 Query 11155 CATAAC---GGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC---GCAAGGTCCAC 11208 | || | |||||| |||| ||| ||||||||| ||| | ||||| ||| Sbjct 771 CCGGTGTGGGGTTTGCGCGCCCTGGCCAAGGTGCTGCTGAGCTACCAGCGCAAG---CAC 715 Query 11209 GGCCTGCGCACCGTCGAAT-CGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11267 ||||||||||| | || | || | |||| |||||||||||| ||| ||||||||||| Sbjct 714 GGCCTGCGCAC-GCCGGCTGCGATCATCGGCCGCTGGGCGCCGCCCACGGAGAACGACAC 656 Query 11268 CCGCGCATATGCCACGGC-CGTGGCCCGAGCCATGG-----GGGTTCCACCGCAGGCC-- 11319 |||| || ||| || | |||||| | ||| ||| || || || || Sbjct 655 GGGCGCCTACGCC-CGCCAGGTGGCCAAGGTGCTGGGTGTAGGGGTCAACGACA--CCAT 599 Query 11320 -GGCCTGCACATGGACCAGGACACCCTGGCCGC-CCTGGTGACCGCGATCATTCGGCACG 11377 | |||||| | | | | || || || || | | || | || ||| | |||| Sbjct 598 TGACCTGCA---GCAGCCCGCAACGCT-GCAGCGCATCTTGCCGGCCATCGTCGCCCACG 543 Query 11378 AAAACGGGCAGCAGCCCTACAGCGCCGAGCAGATCGCCCAGGCCGTGCG 11426 |||||||||||||||| ||||||||||||| ||||||| | |||||||| Sbjct 542 AAAACGGGCAGCAGCCGTACAGCGCCGAGCTGATCGCCGAAGCCGTGCG 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116357273516286