Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq25614 86.0 4e-12 seq27836 82.4 5e-11 >seq25614 Length=477 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||| ||||| || || || || ||| | || |||| |||| Sbjct 155 ACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATT 96 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||| |||||||| || || ||| |||| | ||| || ||||||| Sbjct 95 ACAATATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGG 44 >seq27836 Length=415 Score = 82.4 bits (90), Expect = 5e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| | |||||||| || || || || |||||| ||| ||||||||| Sbjct 73 ACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATT 132 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTA 22066 ||||||||||||||||||| || ||||| |||| | ||| | || || || | ||| Sbjct 133 ACAATATTCAGAAGGAATCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTTA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357969684845806