Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14623 107 2e-18 seq32362 105 6e-18 seq7414 105 6e-18 seq25614 95.1 1e-14 seq28136 93.3 4e-14 >seq14623 Length=969 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| ||||| || || || ||||||||| | || || |||||| || || Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTG 178 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || ||||| | || ||||||||||||||||| ||||||||||| || || || || Sbjct 177 CTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTT 118 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 | |||| | |||| |||||| | | ||||| || | || | || |||||||| Sbjct 117 TGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGT 58 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || || || ||||| Sbjct 57 AAGAGTTTTGACGAAGATTTGCAT 34 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||||||| | || | | ||| || || || || || Sbjct 686 GTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCCG 627 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||| ||||| || |||||||| |||||||| ||||| || Sbjct 626 GCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 567 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || |||| ||| | ||| || || || || ||| Sbjct 566 ACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTT 507 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 506 TTAACAAAAATCTGCAT 490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| ||||| ||||| || | || || |||||| || ||||| ||| Sbjct 914 GTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCA 855 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 854 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCTTAGCCTTC 795 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || |||| || | || || || || || ||| Sbjct 794 ACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGTTAGGGTT 735 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 734 TTGACAAAGATCTGCATG 717 >seq32362 Length=298 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 |||| ||| || ||||| || | ||| || | || | |||||||| || || |||| Sbjct 243 ATTTTCAACACCCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGT 184 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 | |||||| || ||| || ||| || || ||||||||||| | ||||| | ||| | Sbjct 183 TATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCT 124 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || || ||||| ||||| ||||| ||| || ||||| | |||| || |||| Sbjct 123 GATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGG 64 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || |||| || | || ||||| |||| || || ||||| |||||||| Sbjct 63 AGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 6 >seq7414 Length=1926 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||||||| || || ||| || || || || || Sbjct 27 CGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCC 86 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | |||||| ||||| |||||||||||||| ||||| |||||| || Sbjct 87 GGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGTCTT 146 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | ||| | || |||||||| | || | ||| ||||| |||| || Sbjct 147 CACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGT 206 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 207 CTTCACGAAAATCTGCAT 224 >seq25614 Length=477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| |||||||| |||||||| || || | ||| || Sbjct 62 ACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTCC 121 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||||||| |||| || | ||| ||||| || ||||| ||||| ||||| Sbjct 122 AGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGG 181 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| |||||| | | || || |||| || | || || Sbjct 182 ATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCTTT 241 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || ||||||||||| || |||||| Sbjct 242 CCAGTTAGTGTTTTTACAAAGATTTGCATG 271 >seq28136 Length=407 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| ||||| || |||| || | || | || || ||||| |||||||||||||| Sbjct 242 AATACCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATC 183 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || ||| || |||||| | || || || || | || ||||| || ||||| || Sbjct 182 CGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGG 123 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||||||||| || || || | | || | || ||| || ||| Sbjct 122 CGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTC 63 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || ||||| || |||||||| Sbjct 62 AACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419952426530868