Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq195 219 8e-52 seq451 159 7e-34 >seq195 Length=24554 Score = 219 bits (242), Expect = 8e-52 Identities = 488/721 (68%), Gaps = 25/721 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || ||| ||| ||||| || ||||| |||||||||| | |||| Sbjct 22861 CTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAATGAAAACCTGGCCATGAACTTCAGC 22920 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || |||||| || || || || |||||||| || ||||| || || |||||| Sbjct 22921 AACGAAGTGCAGGTTCCCGAAGCTCGGTGTTTCTACGGTTTTCAGATTGCTATCGAGAAC 22980 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||||| || | ||| | ||||||||||| ||| | || ||| Sbjct 22981 ATTCACTCGGAGGTCTATTCGCTACTCATTGACACGTACATCAAGGACGCTGTAGAG--- 23037 Query 42603 AACGGGCTGTTCAAG---GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | || || | ||||| || || || || || | |||||||| || | ||| Sbjct 23038 AAGGACCTTTTGCTGCGTGCCATTGACACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGG 23097 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||||| ||| || | | | | | || ||| | || | || || || Sbjct 23098 GCACTCAAGTGGTGTGACCCGCGTGTGTCGTCATACGCAGAGCGTCTTCTTGCGTTCGCC 23157 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA- 42778 | || ||||| ||||||||||| ||| ||||| ||||||||||||||| ||| | Sbjct 23158 TCAGTGGAGGGTATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGT 23217 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| || ||||| || |||| ||| ||||| || || ||||| | || ||||| |||| Sbjct 23218 GGTCTC-ATGCCTGGTCTCAGCTTTTCGAATGAGCTTATCAGTCGTGATGAGGGTATGCA 23276 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 || ||||||||||||||| ||| ||| | | ||| | |||| || || || Sbjct 23277 TACCGACTTTGCCTGCCTCATGTACTCCAAACTGGTCA---ATAAGCTGCCGGAGAGTCG 23333 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 || | | ||||| || || |||| |||||| | ||||| | | || || Sbjct 23334 TGTGCACGAGATCATTCGTGACGCGGTGGCTATCGAGCACGAGTTTGTGTGTGACTCCCT 23393 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCG 43017 || || || |||||||||| | | || ||||||||| |||||||| ||| ||| | Sbjct 23394 CCCTGTTGAGCTCATCGGCATGAA-CTCAACGCTCATGTGCCAGTACATCGAGTTCGTGG 23452 Query 43018 CCGACCATCTCCTGTGC-CA---GATGGGTCTCAGCCGCCTCTACAACACGCC--GTGCC 43071 | |||| ||| |||| | || | | |||| || | ||| |||| | | || Sbjct 23453 CTGACCGTCTGCTGTACTCATTGGGGGTGTCTAAG----ATTTAC--CACGTCAAGAACC 23506 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||||||| ||||| | ||||| | |||||||||||||||| || |||||||| | Sbjct 23507 CGTTCGACTGGATGGACATGATCTCACTTCAGGGCAAGACCAACTTCTTTGAGAAGCGTG 23566 Query 43132 T 43132 | Sbjct 23567 T 23567 >seq451 Length=16219 Score = 159 bits (176), Expect = 7e-34 Identities = 575/891 (65%), Gaps = 44/891 (5%) Strand=Plus/Plus Query 244069 CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 |||| ||| | ||| ||| |||| || | | |||||| || | || ||||| || | Sbjct 7912 CAGCTCCTTCATCAGATGCTTGTTGACGATCGTAAACTCACCAGCGAGTACGCGACGATT 7971 Query 244129 GTAGAGGTT-GCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGC 244187 ||| | ||| | || || |||||||||| || |||||||||| ||||| || || Sbjct 7972 GTACATGTTTGATG-TGTACGGCTCGATGGATTCATTGTTGCCCAGGATCTGGGCAGTTG 8030 Query 244188 TCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGA 244247 ||||| ||||| || | ||| |||| | ||| | | |||||| | ||| | | Sbjct 8031 AAGCAGTTGGCATAGGAGCCACTAGCAAAGAGTTACGAATACCGTGCTT---GAT-CACA 8086 Query 244248 GTCTG----AGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 ||| | || |||||||||| | || || | || | ||| |||||| Sbjct 8087 TTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGA-----CGACG-GAGTGACACCCCAC 8140 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 |||||||| || | | |||||||||| | ||| ||||| | | ||| ||| ||||| Sbjct 8141 ATGTCAAATTGGAAGATCCCCTTGCTGGCAGGGGAGCCCTGGAACGTCTCGTACGGACCC 8200 Query 244364 TCGCGCTGGGCCAGCT---TACAGCTCTCG-TCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || ||| | || || | |||| |||| | |||||||||||||||| || Sbjct 8201 AGTTCCTTGGCAATCTCCATAGAAGTCTCCATCGAAG----CGTAGTAGATGGTCTCAAA 8256 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 ||| ||||||||| || || |||| | | || | | | ||| | | || Sbjct 8257 GATGTTCTTGTTCAGTTCACGAGCCTCTTCACTTTCAAACGCAAAGTTCATGAGAAGAAA 8316 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | |||||||| || || || || || || | ||| | || ||| ||||||| Sbjct 8317 AGCATCGGCCAGACCTTGAACACCAATTCCCACGGGACGATGGCGCATGTTGGATTTTCG 8376 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||||| | || ||||| ||||| |||| || || ||||||||||||||||||| | Sbjct 8377 AGCTTCTGCAACCGGGTAGTAGTTGACGTCAATGACTTTGTTGAGGTTGCGGGTGACGAC 8436 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 | |||||| ||||| | ||| | || | | || || Sbjct 8437 CTTGGTCACGTCGTACAGCAATTTGTAGTTGAACACACCG---TCTTC------------ 8481 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 |||||||| | || || || |||| |||||| || || ||||| |||| Sbjct 8482 ---CACAAACTTGGGCAGCGCCACTGACGCCAAGTTGCACACCGCAACCTCGTCCGGAGA 8538 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||||||| | | ||| ||| | ||||||| | ||| ||||| || | ||| || Sbjct 8539 CGTGTACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTG 8598 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||||||||| ||| ||||||||||| ||||| |||||| |||| ||||| | ||| Sbjct 8599 ATTGGACTTACGATTGGCCGCGTCCTTGTAAAGCATAAAGGGCACCCCCGTCTCAATCTG 8658 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC 244899 ||| | | || | ||| | | | || |||| |||| ||||||| ||||| Sbjct 8659 TGCGTCCAAGATGGCAAACCACAACTGCTGCGCATTGATCGTCTTGCGAGCACGTCCCTC 8718 Query 244900 TGCCTCGTAGCGGGT-GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGT 244949 ||| || || | ||| |||| ||| || || |||||| ||||| Sbjct 8719 CTTCTCATA-CGTTTCGTAGAGGGTCTCAAATTCATCTCCCCAGCACTCGT 8768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943919689114640