Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq1131 531 1e-146 seq8333 361 1e-95 seq1720 114 3e-21 seq7410 98.7 2e-16 >seq1131 Length=8710 Score = 531 bits (588), Expect = 1e-146 Identities = 1548/2325 (67%), Gaps = 140/2325 (6%) Strand=Plus/Minus Query 2901 TCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAAGAAGGACGGCGCGGACTACAAGG 2960 |||| |||||||| || | || | |||||| ||||| |||| |||| ||||| Sbjct 5401 TCGAGATGCGCATGGTGCAGCTGGTGCTGAAGGACCAGAAGACGGGCGGCGACTTCAAGG 5342 Query 2961 AAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGCGCGCGTG---CGCAAGTACGACG 3017 | ||||||||||| ||||| || | ||||| ||||||||| ||| ||| | | Sbjct 5341 AGATCGACCTGCTGGGCCGGCAGCTGGAGCGCACGGCGCGCGTGGAGCGC---TACCA-G 5286 Query 3018 AG-ACGGGGAAGGAATCGGACCTGAACCCGAAGATTGCGTCGCGCAACGCCGGCCCGAAA 3076 || ||||| |||||| ||| ||||||| || ||||| |||||||||| | || || Sbjct 5285 AGCACGGGCAAGGAAGGCGACTTGAACCCCAACATTGCCGCGCGCAACGCGGCGCCCAAG 5226 Query 3077 CGCCGTGCGCCCCGTAACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGTTC 3136 ||| || || ||| | ||| ||| || ||| | || | | || ||| Sbjct 5225 CGCACGCCGAAGCGCAACCACTTCACCGAAGAGCAGATCGAGAAGCTGCTGGAGATCTTC 5166 Query 3137 CGCGATTCGCTGTTCGACTAT--CAGAAAGTC-TGGTAT-CGGA-ACGGCGATCAGCGCA 3191 | ||| | || | ||| | |||| ||| | || | |||| |||||| Sbjct 5165 CACGAGCAGAACTTTGGGTATGCCGCGAAGTGGTGGGAGGCGCAGACGG-----AGCGCA 5111 Query 3192 CGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGC 3251 |||| | ||||| |||||||||||||| || || |||||||| || |||||||||| Sbjct 5110 CGCGGCTGCTGCTGAAGTCGCGGCAGATCGGGGCCACTTGGTACTTTGCCCGCGAGGCGC 5051 Query 3252 TCGTCGACGCGCTCGACACCGAC---CGCAATCAGATCTTCCTATCGGCCAGCAAGGCGC 3308 | | |||||| | ||| || ||||||||||| ||||| || || ||||||| Sbjct 5050 TGAT--ACGCGC-CATCACGGAGGGGCGCAATCAGATTTTCCTTTCTGCATCAAAGGCGC 4994 Query 3309 AGGCGCACGTCTTCAAGCAATACATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGAGC 3368 |||||||| |||||| ||||| | || || || | || | | ||| |||| Sbjct 4993 AGGCGCACCAGTTCAAGACGTACATGCTGGCCTTTGC-CGGGCTGGTG--GGCGTGGAGC 4937 Query 3369 TCACGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAACG 3428 | | |||||||| ||| | || ||| ||||||| |||| |||| |||| || || | Sbjct 4936 TGAGCGGCGACCCTATCGTGCTGTCGAACGGTGCGGAGCTGCACTTTTTGGGCACCAATG 4877 Query 3429 CGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCCGA 3488 || || |||||| | |||| ||||||| ||||| || | ||||||||| || Sbjct 4876 CGAAGACGGCGCAGGGGCGCAGCGGCGACTTCTACTTCGATGAGTTCTTTTGGGTGTCGG 4817 Query 3489 AGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAAGA 3548 || ||| || | |||||||| || ||| |||||||| |||||||| |||||||||| Sbjct 4816 GCTTTCGCCAGCTCAACAAGGTGGCCGCGGCCATGGCGACGCACAAGCATTGGCGCAAGA 4757 Query 3549 CCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGC 3608 | |||||| ||| |||||| | |||| ||||||| ||||||||| |||| || Sbjct 4756 CGTACTTCTCCACCCCGTCGGCCATGTCGCATGAGGCGTATCCGTTCTGGAACGGCACGG 4697 Query 3609 A-CGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCG 3667 | ||| ||| |||||| | ||||||| |||| |||||| |||||||| ||| Sbjct 4696 AGCGC-AACAAAGGCCGCAGCAAGGGCGAGGCCATCACCATCGACGTGAGCCACGCAGCG 4638 Query 3668 CTCGTGCGCGGCATGTTGTGCGAGGACG--CGC-AGTGGCGGCAGATCGTGACCGTGCTC 3724 | |||||||| | ||| || || ||| ||||||| | | ||||| | Sbjct 4637 C---TGCGCGGCGGCATCCGCGGGGCCGATCGCAAGTGGCGCGACGTGGTGACGATCGAG 4581 Query 3725 GACGCG--ATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACA 3782 |||||| | | | | |||||||||||||||||||||||||||||||| ||| || Sbjct 4580 GACGCGGCACGCCTG--GGCTGCAACCTGTTCGACATCGACGAGCTGCGGGAAGAAAGCA 4523 Query 3783 GCGCCGAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGACGA-TTCGCTGTCGGTG 3841 || | || || ||||| |||||| |||||| | ||||||||||| |||| | || Sbjct 4522 GCCCGGAAGAGTTCGCCAACCTGTACATGTGCGAGTTCATCGACGACAGCGCTAGC-CTG 4464 Query 3842 TTCAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGAC 3901 |||| ||| ||| |||| |||||||||| ||| ||||||| |||||||| Sbjct 4463 TTCACGCTCAAGGAAATGCAGGGCTGCATGGTGGACAGCTGGGAGGCGTGGGCGGA---- 4408 Query 3902 TTTTC--GCCG-CTGCTGCTGCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGAT 3958 || | |||| ||| | ||| |||| || || ||||||||| || ||||| Sbjct 4407 -TTGCAAGCCGTTTGCCAC-GCGGCCGTACGCGCACTTTCCGGTGTGGGTGGGGTACGAC 4350 Query 3959 CCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4018 || ||| ||| ||||| | |||| ||| | Sbjct 4349 CCATCGCACACCGGCGATGCTGCGGCGCTGGTGGTGATTGCACCGCCGCGGGCGCCGGGC 4290 Query 4019 NNNNCCTTCCGCGTGCTCGAACGTCACCAGTTCCGCGGCAACGACTTTGAGGAACAGGCC 4078 ||||| |||| | || || |||||| || ||||| ||| | ||||| Sbjct 4289 GGCAAGTTCCGGCTGCTGCACCGGCAGCAGTTCAAGGGGGCGGACTTCGAGCAGCAGGCA 4230 Query 4079 GCGGCAATCGAGGCGATCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCA-C 4137 | ||| ||| |||||||||||| | |||||| |||||||| |||||||||| | Sbjct 4229 GAGGCCATCCGCGCGATCACGCAGAAGTTCAACGTGACCTACATCGGCATCGACACCAGC 4170 Query 4138 GGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCT 4197 |||| ||||||| |||||||| ||| ||| ||||||||| || || | || || || Sbjct 4169 GGGC-TGGGGCAGGGCGTCTATCAGAACGTCATCAAGTTCTTTCC-GCAGGCG-CGGGCC 4113 Query 4198 GA--ACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGG 4255 | | ||| |||||||| | |||||| ||||| |||| | || || || | Sbjct 4112 TACCAGTACAGCGTGGAGGTGAAGAGCCGCCTGGTGCTGAAGGCCAAGCAGGTGATCGGC 4053 Query 4256 AACGGCCGCCTGCAATTCGAC-GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGAT 4314 || |||||| | | | ||| ||||| || || ||| |||| |||||||| ||||| || Sbjct 4052 AAGGGCCGCTTTGAGATGGACAGCGGG-TGCACGGATGTGGCAGCGGCGTTTATGGCCAT 3994 Query 4315 CAAACAGACGATGACGGCGAGCGGCCGCCAGGCGACCTACACCGCCGGCCGTACCGAGGA 4374 | || | ||||||| | || ||| ||||||||||| ||||| | ||| || Sbjct 3993 CCGCAAGGTGCTGACGGCATCCCAGCGGCAGATCACCTACACCGCGGGCCGCAGCGATGA 3934 Query 4375 AACCGGCCACGCCGATCTGGCGTGGGCCTGCCTGCACGCAATCGACCGCGAGCCGCTCGC 4434 |||||||||| |||||||| ||||| ||| |||| || ||||| ||| | | || Sbjct 3933 GGCCGGCCACGCGGATCTGGCCTGGGCGTGCATGCATGCCTTCGACAACGAATCTTTGGC 3874 Query 4435 CGG---------CGGCGGCATTCATTCTTCTTCTTTCACGGAGTTT------TACGCATG 4479 ||| |||||||| ||||||| | |||| || | |||||| Sbjct 3873 CGGCGATGTGGCCGGCGGCA---ATTCTTC------GATGGAGATTTTTTGATGCGCATG 3823 Query 4480 AGCAAg-----cgccgatcgcgcgcgccgcgcacgttcgc--ggccgcgcccaatccgag 4532 ||||| | | | | | |||| | | ||| || ||| ||||| | | Sbjct 3822 CGCAAGGCAGCAACAGCCCACCCCCGCCACACCCGTCAGCCAGGCACCGCCCTGGCGCAC 3763 Query 4533 cgccggcagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCGACGATCCGACGCCCGT 4592 |||| | ||| || || | |||| ||| ||||| || | ||| ||| || || Sbjct 3762 CGCC--CGGCGGCGGGCGAG---GTGC--AGGCGTTCACCTTTGGCGAGCCGGAGCTGGT 3710 Query 4593 CATGAACCG-GGCCGAGATTCTCGATTACGTCGA---GTGCTGGTCGAACGGCGAATGGT 4648 |||| ||| | ||||||||||| || | || || || ||| | |||| Sbjct 3709 GCCCCACCGCAGCC----TGCTCGATTACGTGGAAACGGCCT--TC-AATGGCAAGTGGT 3657 Query 4649 TCGAGCCGCCGGT-CAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCACGCACCAT 4707 |||||||||| | |||| | | ||||||||| || | ||||| ||||||| Sbjct 3656 ACGAGCCGCCGCTGCAGC-TGGACGGCCTGGCCCGCGCGCTGCGCGCATCGCCGCACCAC 3598 Query 4708 AGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACGTTCCGCCCGCAC-CGCTG 4766 || || | || || ||| ||| | |||||| | | ||| ||||||| ||| Sbjct 3597 GGCAGCGCCATCTTTTTGAAGCGCAACCTACTGGCGGCCAGCTTCATCCCGCACAAGCT- 3539 Query 4767 GCTGTCGCGGCACG-CGTTC-GAGCGGTGGGCGCTCGATTTCCTGACGTTCGGCAACGGC 4824 |||||||| | || ||||| | ||| | |||| | || || || ||| | ||||| ||| Sbjct 3538 GCTGTCGC-ACGCGACGTTCTGCGCGCT-GGCGTTGGACTTTCTCACGCTGGGCAATGGC 3481 Query 4825 TATCTGGAACGCCGCCGCAACATGGTCGGCGGCACG---CTGCGGCTCGAGCC-CGCGCT 4880 || |||| || ||| | | ||||||| ||| ||| | ||| |||| Sbjct 3480 TACTTGGAGCGGGAGCGCTCC---CCCTTCGGCACGGATCTG-GGCCTGCGCCATTCGCT 3425 Query 4881 CGCGAAGTACGTCCGGCGCAAGGCCGATTTCAGCG-GCTTCGTGTACGTGAACGG--CTG 4937 | |||| |||||| || || ||| | ||| | | |||| ||| ||| Sbjct 3424 GGGCCTGTACACGCGGCGC--GG--GAAGGCAGGGCGCTATTTCTTCGTG--CGGCACTG 3371 Query 4938 GCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGAC-ATC- 4995 | ||| |||||||||| ||| ||| || | ||| ||||| |||| ||| Sbjct 3370 GGGCGAGGAACACGAGTTCGCGCCGGACTCTGTCTGGCAG---GTGCGCGAGGACGATCT 3314 Query 4996 -AATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAA 5054 |||||||| |||||| |||| ||||| |||||| || |||| |||||| ||||| Sbjct 3313 GGCCCAGGAGGTGTATGGCGTGCCGGAGTACCTGAGCGCGTTGCAGTCGGCCCACCTGAA 3254 Query 5055 CGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCAT 5114 ||| | | || |||| || ||| ||| ||||||||||||||||| ||||||||||| Sbjct 3253 CGAGGCCGCCACCATGTTTCGCCGCCGGTACTACGAGAACGGCAGCCATGCCGGCTTCAT 3194 Query 5115 CCTGTACATGACCGACGCCGCGCAGAAGCAGGA-CGACGTGGACA 5158 | ||||| ||| ||||||| || | |||| | ||||||||||| Sbjct 3193 CATGTACCTGAGCGACGCCACGGTG-AGCACCACCGACGTGGACA 3150 Score = 313 bits (346), Expect = 6e-81 Identities = 629/916 (69%), Gaps = 35/916 (4%) Strand=Plus/Minus Query 723 CAGTTCGATGTTTTCGGCCACGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTT 782 |||||||||| ||| | | ||||| |||| ||||||||||||||||| ||||||| Sbjct 7773 CAGTTCGATGCCGTCGATGAGGGCGCCGCGGCCGTAGTCTTCGACCACGTAGTCGTCGTT 7714 Query 783 CGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTG-CGCCGGC 841 ||||| ||| |||||| | ||| || ||| | ||||||| |||| || |||| Sbjct 7713 GGACGACTCGAAGTTCTGCACCGCATCGACCTCGGGCGCGTCCTTCA-CGTGGCGGCGGC 7655 Query 842 GCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCT 901 ||||| | ||| ||||||| ||||| || |||||| | ||||| | || | || || Sbjct 7654 GCGCGGCGATCTGCCAGTAGATGGACAGGTTGGACAGCGTGGTGACGAGCACCTTGC-CT 7596 Query 902 TCGGG-AAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATC 960 ||||| ||||| |||||| ||||| |||| ||| | |||||| || | || | Sbjct 7595 TCGGGGAAGAAGGGCACGGTGACGGCGCGCAGGCCGCCTACGCGCTTTTGCGAGATGACC 7536 Query 961 AGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTCGCGTTGACGATCGGGAAATACTTG 1020 ||||||| |||||| ||||| | | |||| |||||| | |||||| ||||| Sbjct 7535 AGATCGGTGGCGAGCGTTTCGGTGGCGGGCTGCTCTTGGTTGACCAGCGGGAAGAACTTG 7476 Query 1021 TCGTGCAGCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTCCTGGAACCACGGG 1080 || |||| ||| |||||||| ||| ||||||||| | | ||| | ||| |||||||| Sbjct 7475 TCATGCATGAGCCCGCGGCCGAGGATGGCGACGAGGTCGGGGTCGCCGTGGTACCACGGG 7416 Query 1081 TCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCC 1140 |||| || | || | | | || |||||||||||||||||||| ||| ||| | | Sbjct 7415 TCGAGCA--GCTGA-ATGCTGTCGTACACGAGCGCGTCGAGGTTCTTGTACTCGGC--GC 7361 Query 1141 TTGC--CGACGAGCACCTTGCCGGCCTGCTTCGCGCCTTC---GTGCAGCACGCGCTGTG 1195 | || || | ||||||| ||| ||| | || | || ||||| | Sbjct 7360 TGGCGTCGCTGCCCACCTTG------ATCTTGGCGGCGTCGGAGCCCATGACGCGGGCGG 7307 Query 1196 CCGCGCGCTCGCGGTACTGTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGGGTTTG 1255 | || |||||||||| |||||||| || |||||||||| |||| ||| |||| | Sbjct 7306 CGGCCTTGTCGCGGTACTTCTGCAGCCAGCCCTTGTTCACGTCTTGCAGCAGGGGGTGGG 7247 Query 1256 CCTGACGGTCAGTCGTCGCGGCCG-CCTTCACGCCGTTCCAGCCGATCATGATGCGATCG 1314 | ||| || |||| | || |||||||| ||||||| | ||||| ||| Sbjct 7246 CGGCGAGGTTGGT-GTCGGGCTCGATGGAGACGCCGTTGAAGCCGATGGTCATGCGGTCG 7188 Query 1315 AGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCGGCGAACTTCGCC 1374 |||||| | |||| |||| |||||||||||||| |||||||||| | | |||| Sbjct 7187 AGCGCCTGGCGCTTGATGATCGCGTCGCGGATGCGCGTCTGGAAGTCGGGGCGGTGCGCC 7128 Query 1375 CATGCGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAG 1434 || ||||||||| ||| || | | | ||||||| ||| ||||| | ||||| |||| Sbjct 7127 CAGGCGTCGAGCAGGCGGTAGGTGAACTGCGTGTCGAAGTTGGTCTGCACGCAGGCGTAG 7068 Query 1435 ----CGGTTGCTGTCGA-GCGCCGTCGGGTCGATCGGTTGGCG--CGCGGCCTTCGTC-G 1486 ||||| | ||||| || ||| | | ||| | ||| | ||| || | | Sbjct 7067 CCGTCGGTTTCGGTCGATTCGACGTTGCG-----CGGCTTGCGGACCTTGCCGGCGGCTG 7013 Query 1487 TGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT 1546 ||| ||||||||| || || ||||||| ||| || ||| | ||| ||||| | | | Sbjct 7012 TGTTGGTGCGGCTGGCAATGGGGCCGGTGACGCCCACGCCCACCTTGTCGCCGGCCTGGT 6953 Query 1547 CGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTT 1606 | |||| | | ||||||| || ||| || |||||||||||| ||| Sbjct 6952 CATCCACGCCGATGATGTTGATGGAGGCCAGGAACGCGGACGATTCCTGCATGCGGCTTT 6893 Query 1607 CGAGCCGCTGTTGCAC 1622 ||||| || ||||| Sbjct 6892 CGAGCTTTTGCTGCAC 6877 Score = 188 bits (208), Expect = 2e-43 Identities = 293/418 (70%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 2132 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2191 |||| |||||||| | |||||| |||||||| ||||| || |||| |||||| | || | Sbjct 6296 GCTTGGCGGCGAACTCCAGCGCCTCGGTGCCCAGGCTGGCGGGGTTGTCGGTGACGGCCA 6237 Query 2192 GCCCAACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGA 2251 | || ||||| |||||||||||| |||||||||| ||||||||||||||||| || ||| Sbjct 6236 GGCCCACGAGGTACGCCTCGCCGGTGTCGGCGAATTCGGGGTTGATCTCGATGGAGGTGT 6177 Query 2252 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2311 |||||||||||| ||| |||| ||| | | | | || || ||| || Sbjct 6176 AGAGCTTCTGGCCGGCCTTGTTCAGCTCGATCAATGCCGGGTTGGGCGAGAGCTGGGCGA 6117 Query 2312 ACAGCGCCATCTTCCCTTTCAGCGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCA 2371 | || || | |||| ||| |||| ||| | ||| | | ||| | || || Sbjct 6116 AGAGGGCGAGCTTC---TTCTTGCCGCCGATTTCCACCTCTTCGGTCTTGACGGCCTGCA 6060 Query 2372 CGTCGCCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCT 2431 ||||||| || |||| ||| || |||| || ||| | |||||||||||||| Sbjct 6059 CGTCGCCGTAGGCGCGGAAGGG-------GCCGTCA--GGCAGCACGCCCTTGATGTGCT 6009 Query 2432 CGACGTTCACGCGTGCGCCGTACAGCTTCGGGTCGTAGTGCTTCGCCATCTGCGTGAGCC 2491 | | | | | ||| |||| |||| || |||||||| ||||| ||| || Sbjct 6008 CCAGGCTGATGCGGGCGCTGTACGTGTTGCGGTCGTAGCTGGCGGCCATTTGCTCCAGGT 5949 Query 2492 ATTCACGCTTGATCTCGCGACCGTCGACGGTCGCGCCTTCCACTGCGACGCGGAAGAA 2549 | || | ||||| ||| |||||| ||| ||||||||||| |||||||||||||| Sbjct 5948 GGGCGCGTTCGATCTTGCGGCCGTCGGTGGTGGCGCCTTCCACGGCGACGCGGAAGAA 5891 Score = 105 bits (116), Expect = 2e-18 Identities = 185/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 343 GCGCTCGAACTGGTCGGGCAGCGTGAGCCCGTTCGAGAGCGCGTAGGCCGCGATCGCGAG 402 ||||| | | |||||||||| | | |||| | ||| |||||| ||||| | ||| Sbjct 8210 GCGCTGGTAGTGGTCGGGCATGGGCATGCCGTGCTGCAGCACGTAGGGGGCGATGGTGAG 8151 Query 403 CGCGCCGTTGAAGTCGCCGGCATCGATGCGCCAGACCATGACCGTCACGAGCACGTCGTC 462 ||| | | || ||||||| |||||| ||| |||||| || |||||| |||| Sbjct 8150 CGCCAGGGCGTAGGCGCCGGCGTCGATGGCCCACACCATGCAGGTGGTGAGCACCGCGTC 8091 Query 463 CTGCGCGCCGCGGCCGCCGCTCAACACGCCCGCCACATAGTCGGCGTAGTCCGGCAGCAG 522 | ||||||| ||||||| | | | |||| | | ||||| ||| | |||||||| Sbjct 8090 TTCGGCGCCGCCGCCGCCGGTGAGCGCGCCGCCGATCCAGTCGAGGTACGCGGGCAGCAG 8031 Query 523 CTT-GCGTTTCAGCTCGACCTTCCGCTCGATCGACTGAATGCCCTTGAGCGCGCGGCGGT 581 ||| || || | | | ||| ||| || ||||| ||| |||| | ||||| || Sbjct 8030 CTTGGCCTTGGTGGT-GCGCTTGAGCTGGACGGACTGGATGGCCTTCAAGGCGCGCTTGT 7972 Query 582 CGGCCGCGAGCTTCGCGAGCATCAGCT 608 |||| ||||||||| | ||||| |||| Sbjct 7971 CGGCGGCGAGCTTCACCAGCATGAGCT 7945 Score = 96.9 bits (106), Expect = 8e-16 Identities = 182/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 5228 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5287 |||| ||| ||||||| | |||| || ||| | |||| ||||||| || ||||| | Sbjct 3080 GCGGCAAGGCGGACGGCTTGAAGCTGATCCCCATCAGCGAGATCGCCGCCAAAGACGACT 3021 Query 5288 TCTTCAACATCAAGAACGTGACGCGC---GACGATCTGCTCGCCGCGCACCGCGTGCCGC 5344 || | |||||||||| || || | ||| |||| ||||| ||||||||||||| Sbjct 3020 TCGCCGCCATCAAGAAC---ACCAGCATGGCCGACGTGCTGGCCGCCCACCGCGTGCCGC 2964 Query 5345 CGCAGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGC-ACGCCGGATACCGCC 5403 | |||| |||||| | || | ||| |||| || |||||| ||||||| | || Sbjct 2963 CCGGCCTGCTGGGCATCATCCCCAACAACACGGGAGGCTTCGGCAACGCCGGCGA-GGCT 2905 Query 5404 GCGCGTGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAAC 5463 || || ||| | |||||| ||| |||| | ||||||||| | | ||| || Sbjct 2904 CTGCAGGTCTTCATGGCCAACGAGATCGCGCCGATTCAGGCGCGCATGCGTGGGCTCAAT 2845 Query 5464 GACTGGCTCGGCGACGAGGTCGTG 5487 || ||| | || | ||||| ||| Sbjct 2844 GAGTGGATGGGGGTGGAGGTGGTG 2821 >seq8333 Length=1724 Score = 361 bits (400), Expect = 1e-95 Identities = 744/1085 (69%), Gaps = 56/1085 (5%) Strand=Plus/Plus Query 23340 AAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGA 23399 || ||||| ||| || |||||||||| ||| | |||||| || || || ||||| Sbjct 627 AACTCGGCCAGGTAGGTGTCGGTGATGGATTGGTTGAACACCAGGTTCTCCAGCGGCGGC 686 Query 23400 ACCGGCGTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGT---G 23456 |||||||||||||| || ||| | | |||| || || ||| || | | Sbjct 687 ACCGGCGTGTAGTCGTAGCTGATCTGCAGGCGGCCGACGGCCAG---GTCTTCCTTGCCG 743 Query 23457 TTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGC 23516 ||| | || || |||| |||| | | ||||| || |||||| |||| | | Sbjct 744 TTCAGATCGGGGTCGAAGTACGCATTGGCCCCGATGAGATAGCCGCCATTGACCAGATCG 803 Query 23517 CGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCG 23576 || || | || ||||||| ||| ||||||||| | ||||| || | || || | Sbjct 804 CGGAAGCGGCTGTTGATGTAGCCCAGCATGTCGCGCACCAGCGAGGGGTGCATGGGCTTG 863 Query 23577 TCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTG 23636 |||| || | | |||||||| ||||| | ||||| |||||| |||||||| ||| Sbjct 864 TCGATGAAGACGAAGTGCGCTTCTGCGATGGTGTCGGCCAGCACCTGGGCGGTGCGGGTG 923 Query 23637 TAGTTCTCGAACGCGAACTT-----CGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACC 23691 ||| ||| || |||||||| ||| || || ||| |||||| |||||||| | Sbjct 924 TAGGGCTCAAAGGCGAACTTTCCGCCGG--CGGCCTCGCAGGTGCGCGAACCCCAGAAGC 981 Query 23692 GGAAGCCGTTGCGGTTCACGAGCGTCGTCACTT-CGTGCTCGTTCAGGTAGCCCGCATCG 23750 || | |||| ||| | ||||| || |||| | |||| ||||||||||||||||||| Sbjct 982 GGTATCCGTCGCGCCGAATCAGCGTGGTGACTTCCTTGCT-GTTCAGGTAGCCCGCATCG 1040 Query 23751 GTCGCCGGGTCCTGCAAATCCCACGACACGTCG-GCGCTGATGCCGGACACGCCGTTCAC 23809 | |||||| ||||| || | |||| ||| ||| ||||||| ||||||||| || Sbjct 1041 CTGGCCGGGCTCTGCAGGTCGAAGAACACATCGCGCG-TGATGCCTTCCACGCCGTTGAC 1099 Query 23810 GACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCC 23869 || | || ||||| | |||||||||||| || || | || | ||| ||||||| ||| Sbjct 1100 CACCATGTTGGAAATGGACTTGTGCCAGCCAATCTCCTGATCCAGCTTGGCGCGCAGGCC 1159 Query 23870 GGCGGCGATCGCCGGCGCCGGG----ATGACGGCCGTCGAGTTCGTCGTGTCGTCCCAGC 23925 ||| || | || || |||| |||||| || | || | | |||||||| Sbjct 1160 CAGGGC-ATAGGCGACGGCGGGCACCTCCACGGCC-TC--GCCCGCCTCGCCGTCCCAGG 1215 Query 23926 CGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCCTGCGGTA---CG 23982 | || ||| ||||| |||||||| | ||||| || ||||||| | |||||| | Sbjct 1216 CCAGGAAGTTGGGCCACATCACCATCACCTCGCGCTGCCCGAACTCGCCGCGGTAGAGCA 1275 Query 23983 CGGCGGCTT-CTTCCT-TCGTC----------TTGCAGCCGGACGCCGACACATAGGCCA 24030 ||||||||| ||| | || | ||| |||| ||||| || |||| | Sbjct 1276 CGGCGGCTTCCTTGGTGGCGGCATAGGCATCGTTGGCGCCGCGGGCCGAAACGTAGGTGA 1335 Query 24031 TCGCGCGCAGCGACTGCG---CGGTCGCCGCGAGCGCGGCCGCGACCGGCTGCGTATCGA 24087 ||||| ||| ||||| ||| |||| | | ||||| || | || || || | Sbjct 1336 AGGCGCGGAGCTGCTGCGCCACGGACGCCATGGCCACGGCC---ACGGCCTTGGTGTCCA 1392 Query 24088 GGCCGGGCGCGGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCG 24147 ||||||||||| ||| ||||||||||||||||| | |||| || || ||||| | Sbjct 1393 GGCCGGGCGCGCCGATGATGCGCGGCTTCACGCCCAATTGCCCCTCGGCCGCCAGCAGGG 1452 Query 24148 CCTTGATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCT 24207 ||| | ||| ||| || |||| || || ||||||||||||||| | | || | Sbjct 1453 CCTGCAGGCCGGTGCGCTGGCCGGCCTCGGTGGTGGTGCCGATGACGTTGGTTGCGGTTT 1512 Query 24208 CGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTC-TGCTTG 24266 | ||||| |||||||||| |||||||| || || || | ||| | | |||||| Sbjct 1513 CCGCGGCGGTGGTGCCTTCGGCCACGCGCACCACCACCGTGA-TGGCGCGGGCTTGCTTG 1571 Query 24267 CCGATCGCGTCGAGCGTG-CGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGC 24325 | ||| ||||| |||| | ||||| |||||||| | |||||||||||||| ||| | Sbjct 1572 CTGATGGCGTCCAGCGCGCCGGCG-AGCGTGCCGCCCGCGCCGGCCTTGCCGATGGCGCC 1630 Query 24326 GACGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGC 24385 | | ||| ||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 1631 GGCCGGGTTGGTCAGCAGCACCGGTACGTTCAGCGGGAACGC-CTCG-----GCGTCGGC 1684 Query 24386 CGCCG 24390 ||||| Sbjct 1685 CGCCG 1689 >seq1720 Length=6403 Score = 114 bits (126), Expect = 3e-21 Identities = 188/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 24206 CTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTT 24265 |||| |||| | | ||| ||||| |||||||||||||| || ||| ||||| Sbjct 6327 CTCGGTGGCGCCTTCGCCATCGGCCACGCGCACGACGACCAGCACCGGGCGGCACTGCTC 6268 Query 24266 GCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGC 24325 ||| |||| |||| || ||||||||| || ||||||||||||||| || || Sbjct 6267 CTTGATGGCGTTCAGCGCCTGGGCCAGCGTGCCCTTGGTGCCGGCCTTGCCGATGGCCGC 6208 Query 24326 GACGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGC 24385 |||| || || | |||||| || || ||||| || | | ||| || |||||| Sbjct 6207 ATCGACCTTGGTGACCAGCACCGGACGGTTCAGCGGGAAAGTGGCCGCATCGGCGTCGCT 6148 Query 24386 CGCCGTGCAGACGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTC 24445 |||||| |||| ||||| ||||||||| ||||| ||| || | | |||||| Sbjct 6147 GGCCGTGGCCACGAGGCCGATCACGGCCGTGGACACGATGCGGATGGAATTGATGCCTTC 6088 Query 24446 GTTGATTTCGATGACGCGTACGCCGTGGTGG 24476 | | | ||| ||||||| | ||| || ||| Sbjct 6087 GCTCACTTCCGTGACGCGAATGCCATGATGG 6057 >seq7410 Length=1926 Score = 98.7 bits (108), Expect = 2e-16 Identities = 764/1199 (64%), Gaps = 80/1199 (7%) Strand=Plus/Minus Query 27690 CCCTGCGTGAACGTGTAGTGCGCGGTGCCGCG-CTTGGCCCGGTCGACTTCGGCGATGAT 27748 ||||| |||||||| |||||| | || ||| |||| | ||| || ||||| || | Sbjct 1596 CCCTGGATGAACGTGAAGTGCGAGC-GCAGCGGCTTGACGCGGGACACCTCGGCCATCAC 1538 Query 27749 GTCGGCGACGTATTCGGCGGTTGCCGGGATGCCGTCGCGCGCGCCGACCGTCATCAAGAT 27808 |||||| ||| | |||| | || | ||||| | || | ||| | || | Sbjct 1537 GTCGGCCACGAAAGCGGCACT------GACGTTGTCGCCCTCGGTCATCGTGAACACCAG 1484 Query 27809 TTCGAACGTGCCCGGCCGGCCCTTCGGCGTCTTCTCGAACCACTCGCGCATCGCGACGTT 27868 ||||| ||| |||| |||||| |||| ||||| |||||||||||| |||| | Sbjct 1483 CTCGAAGGTGTGCGGCGTGCCCTTGGGCGACTTCTGCCACCACTCGCGCACGGCGATCTG 1424 Query 27869 CGCGCCGAACGACGCGCACACT-TCGCGCACGGCCGCAGCCGTGCCTTTCTTGCGCGCGA 27927 | ||||||| | || ||| | ||||||||| || ||||| | |||| | Sbjct 1423 CCCGCCGAAGGCGGC-CACGGTGTCGCGCACGCTGGCGAGGGTGCCGCGCCGGCGCTGCA 1365 Query 27928 TCCGGATTGCCGCTTTCACGCGCGCGCGCTTCACCTGTTCGGGCCAGTAGTCCTTCCACG 27987 |||| || |||| |||||||| | | |||||||||| | | ||||| Sbjct 1364 CTTGGATGGCGTTGCGCACGATGGCGCGCTTGATGTTCTCGGGCCAGTCGGCGCGCCACG 1305 Query 27988 TCTCGACGCCGAGGTGCCACGCGAGCCACGGCAGAAACCGCAGCGGGATCGCGTCCGGGT 28047 || ||||| | ||||| || ||||| ||||| | | ||||||| | | |||| Sbjct 1304 CTTCCACGCCCATCTGCCAAGCCAGCCAGGGCAGCAGCTCCAGCGGGCAGGTGCTGGGGT 1245 Query 28048 CCATCAGCGTGCCGATGTCGACCGG--GATGTC--GCTGAT-GCGCGCGTTCGTGTCCGC 28102 | ||||| || | || || | || |||| | || | |||| || | | || | Sbjct 1244 TCCACAGCGCGCGG-TG-CGGCTGGTCGATGGCCTGCAGGCCGCGCACGGCCACGGCCTC 1187 Query 28103 GAGCCG-GCGCTCGAGCGCGGTCGCGTTCGGCGGCAGCAGCGA------------GGTTG 28149 | |||| ||| || |||||||| ||||| ||||||| || || ||| | Sbjct 1186 G-GCCGCGCGGTCCAGCGCGGTGGCGTTGGGCGGCAAGAGGGACACCGCCGGGGTGGTGG 1128 Query 28150 CC-CGTCTAGTCATCCGCCACCCCGCCGTCGATCAGCTCGATTCCGGTGCAGTACGGC-- 28206 || |||| ||||| | || ||||| | ||| || ||||||||| ||| Sbjct 1127 CCGCGTC-AGTCAACGGCACCCCCGAAGGTGATGGTGGCGG---CGGTGCAGT--GGCTG 1074 Query 28207 GCCTGCTCGTGCGTCACGGGCACGCCGCCGGC-GGGCGAGTCGAGCAGCACCTTTTGCAC 28265 |||||| || ||||| |||| | |||| |||| || ||||| ||| ||| Sbjct 1073 GCCTGCGTAGGCCCCACGGCCACGTCTGCGGCCGGGCTGGT-GAGCACCACGCGCGCCAC 1015 Query 28266 GCCGGCGACGCGCATCGCCGCGTGCAGGCCGTCGAC--CGTGATTTCCATGCCGATGCGC 28323 || ||| | ||| || || | | ||| |||| |||| | ||||||||| Sbjct 1014 ACCTTCGATGTGCAGGGCGGCATAGATGCC--CGACAGCGTGGGCTGGCGGCCGATGCGG 957 Query 28324 CGCATGTCCGCCGCGAACTTCGCGGTGCGCTTGCGGGCTTCCGCGAGCGCCACGCCGC-- 28381 ||||| || ||| | ||| |||||| ||| || || | | |||| | Sbjct 956 TGCATGGCCTGCGCATAGGCGGCGATGCGCTGGCGTGCGGTGGCAATC---ACGCTGGTG 900 Query 28382 GA-TCCGGGCCGGAGAAGAAGCG----CAGCGTCGCGCGGATCGCGTAGCGCACGATCTT 28436 || ||||| || | | |||| || || ||| ||| |||||| ||||||| Sbjct 899 GAGTCCGGCCCCG----GCAGCGTGTACACGGTGGCGGTGATGGCGTAGGGCACGATGCC 844 Query 28437 TGCGCTCTGCACGATCACTTCGTCGGTCTGCGGCCGCTTGCCTTCCAGGTT--CTTC--C 28492 ||| |||||| | ||| |||||||| |||| ||| | | || || | | | Sbjct 843 GGCGGCCTGCACCACCACCTCGTCGGTGAGCGGGCGCACGTCGTCGGCATTGACGGCGGC 784 Query 28493 TG--ACGATCTCGATCAGCTCGTCGCTTG-CGGTTCCGTCGCCTTCGCGCGACAGGATCG 28549 | || || | | ||| || | | | | |||| ||| ||||||||||| | || Sbjct 783 GGCCACCTTCGCCAGCAGGGCGGCCGTGGGCACGCCCGT-GCCGTCGCGCGACAGCACCG 725 Query 28550 TGATGACCATCACGCACGG-CTCGGGGCTGAACGCGGCGGCAGACAGCACGCGGCCATCG 28608 | |||| | ||| ||| | |||||| || || || |||||| |||| ||| Sbjct 724 ACACCACCA-CGCGCCCGGGCGATGGGCTGGTGGCCGCAGCGTCCAGCACCTGGCCGTCG 666 Query 28609 GCTGAACGTGCATGAAACACGTATGCCTCTTCAGGGCCGGCGACGGAGAAGCCGCGCGGC 28668 || | || ||||||||||| || | | |||||||| ||| | ||||||||||| Sbjct 665 GCCGTCTTGGCGTGAAACACGTAGGCGCCCACCGGGCCGGCCACGCTGTAGCCGCGCGGC 606 Query 28669 GCGAGCTGCACGCGCTCGCGCAGACTGTCGTCGTCCTCATAGACC---GC----ATCGAT 28721 |||||||| | ||||||||| | ||| || | || ||| || || Sbjct 605 GCGAGCTGGATGCGCTCGCGGAAGGCGTCATCAGCTTCCATCACCTGGGCGACGGGCGGC 546 Query 28722 ACCGTGCTCCGGATCGGCCGCCGTGACCACGAGCCGCTCGACATCGAACAGCGCCGCGAT 28781 || | | | || | ||| | ||||||||| ||||||| || |||| | ||| ||| Sbjct 545 ACGGCG-TTGGGGTTGGCGGGCGTGACCACCAGCCGCTGCACCCCGAAGAACGCGCCGAG 487 Query 28782 GTGTTCGAGCGTC-GTGCCGCGCGCATAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTG 28839 || || || ||| | ||||| || ||||| |||| | | || |||| |||||||| Sbjct 486 CTGGTCAAG-GTCTGCCCCGCGGGCGTAGGCCAGCATGACGGCGTGCGCGCTGTCGTTG 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114201383741154