Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq8212 140 1e-28 >seq8212 Length=1751 Score = 140 bits (154), Expect = 1e-28 Identities = 293/424 (69%), Gaps = 22/424 (5%) Strand=Plus/Minus Query 17955 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 18014 ||||||||||| |||||| | ||||| ||||||||||| ||||| | || || | | Sbjct 1634 TGGGACGGTACCTTCAAGAGTGGCTGGACCAACAATCCGGCCTGGGTGTTCTTCGACATC 1575 Query 18015 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGT--CGATGCTTCGATGGTCGATAAGT 18072 | | || | | | ||| |||| | ||||| || || | ||| || |||| Sbjct 1574 GTCACCAACGATCGCTTCGGCCTGGGCCATCGTGTTCCGCTGGACTG--GGTGGACAAGT 1517 Query 18073 GGGCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCA 18132 || ||||||| |||||||| |||||||| ||||| || ||| || ||||||||| Sbjct 1516 GGCGGCTGTACCAGATCGCGCGCTACTGCGATGAACTGGTCAGCGATGGCCAGGGCGGCA 1457 Query 18133 AGGAGCCGCGCTTCACCTGCA-ACTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTG 18191 ||||||||||||||||||||| ||| | || ||||| ||||| || || | ||| Sbjct 1456 AGGAGCCGCGCTTCACCTGCAGCCTGTAT-CTGCAGACCCGCGCCGAGGCCTATCGCGTG 1398 Query 18192 GTACAGGATCTCGCGAGCGTCTTTCGCGGCAT----TTCGTACTGGGGCGCCGGGTCGGT 18247 | ||||| |||| | | | || |||||||| ||| || || |||| ||| ||| Sbjct 1397 TTGCAGGACATCGCCACCATGTTCCGCGGCATCAGCTTC-TA-TGCGGCG--GGGCAGGT 1342 Query 18248 GGTCGCGTCGGCCGATATGCCGTCCGATCCGGT-CT-ACCTGTACACGGCC--GCGAATG 18303 | | || |||||||| ||||| || ||||| || |||| || ||| || || | Sbjct 1341 GATGGCCTCGGCCGACATGCCCAAGGACCCGGTGCTGACCT----ACAGCCAGGCCAACG 1286 Query 18304 TCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCGC 18363 || ||| || ||| | || | |||||| |||| | |||| ||||||| || | Sbjct 1285 TCATCGAAGGGCGTTTCCACTATGCTGGCAGCAGCCGCACGGCGCGGCACACGGTGGCCC 1226 Query 18364 TCGT 18367 | || Sbjct 1225 TGGT 1222 Score = 107 bits (118), Expect = 6e-19 Identities = 274/402 (68%), Gaps = 29/402 (7%) Strand=Plus/Minus Query 18747 GCGCGCGCAGTCAAGTCGGTCGACGGCGACACGGTCACGCTCGCCGAGCGCTTCGACGCC 18806 || ||| | || ||||||| |||||||| ||||| || || || || || | || | Sbjct 839 GCACGCACGGTGCAGTCGGTGGACGGCGAGACGGTGACCGTCAGCGCGCCCTG-GTCGGC 781 Query 18807 GAT-CCGGTGGCG--GGCGCTGTGTGGATGATCGAAA-GCCGCGAGCTCGCGGCGCAGCA 18862 | | ||||||||| | || | || | || | ||| |||| ||||| || |||||| Sbjct 780 GGTGCCGGTGGCGCAGTCGGTCTGGGCAT--TGGAATCGCCG-GAGCTGGCCCTGCAGCA 724 Query 18863 GTATCGCGTGGTGAGCGTGCAGGAAAGCGACGACGACGGCCAGATCGTCTACACGATCAA 18922 ||||||||| || || ||| ||| | ||| | || || | || ||||| Sbjct 723 CTATCGCGTGCTGT-CGATCAG-----CGAAGGCGAGGACCTGACC---TATCAGATCAC 673 Query 18923 CGCGACGCAGTACGAGCCGGGGAAGTACGCGGCGATCGACGACGGCGCACAGATTCAGCA 18982 |||| || ||| |||||| |||||||| || |||||||||||| | | | |||| Sbjct 672 CGCGCTCAAGCACGTGCCGGGCAAGTACGCCGCCATCGACGACGGCACGCGCCTGGAGCA 613 Query 18983 ACGGCCGATCACGATCGTTCCGCCATCGGTGCAGCCGCCGCCGTCGAACGTCCGCCT--- 19039 | |||||||| ||| | ||||| ||||||||| | ||| | ||||| || | Sbjct 612 GCCGCCGATCAGCATCATCCCGCCCAGCGTGCAGCCGGCACCGGCCAACGTGCGGATGGC 553 Query 19040 CTCGACATACTCGGTGGTCGATCAGGGTATTTCGAAAACAACGATGGT---GATCGCGTG 19096 |||| ||| ||||||||| ||||| | ||| | | || || | ||||| ||| Sbjct 552 CTCG-CAT--GTGGTGGTCGACCAGGGCA--TCGCTACCTCCG-TGCTCACGATCGAGTG 499 Query 19097 GGATGCAGCGAACCACGCGACAAGCTACGTCGTCGAATGGCG 19138 |||||| ||| || | |||| | || | ||| |||||||| Sbjct 498 GGATGCTGCGGACAAGGCGATCGGTTATGACGTGGAATGGCG 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155569517957448