Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1131 502 6e-138 seq8333 351 2e-92 seq7410 122 2e-23 seq1720 120 7e-23 >seq1131 Length=8710 Score = 502 bits (556), Expect = 6e-138 Identities = 1518/2288 (66%), Gaps = 122/2288 (5%) Strand=Plus/Minus Query 2984 GAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 3043 |||||| ||||| |||| |||| |||||| ||||||||||| ||||| || | || Sbjct 5373 GAAGGACCAGAAGACGGGCGGCGACTTCAAGGAGATCGACCTGCTGGGCCGGCAGCTGGA 5314 Query 3044 GCGGCTCGCGCGCGTG---CGCAAGTACGACGAG-ACGGGGAAGGAATCGGACCTGAACC 3099 ||| ||||||||| ||| ||| | ||| ||||| |||||| ||| |||||| Sbjct 5313 GCGCACGGCGCGCGTGGAGCGC---TACCA-GAGCACGGGCAAGGAAGGCGACTTGAACC 5258 Query 3100 CGAAGATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCGCGCAACGAAATCAGCG 3159 | || ||||| |||||||||| | || || ||| || ||||||| | ||| || Sbjct 5257 CCAACATTGCCGCGCGCAACGCGGCGCCCAAGCGCACGCCGAAGCGCAACCACTTCACCG 5198 Query 3160 ACGAGCAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTAT--CAGAA 3217 | |||||| | || | | || |||| ||| | || | ||| | | Sbjct 5197 AAGAGCAGATCGAGAAGCTGCTGGAGATCTTCCACGAGCAGAACTTTGGGTATGCCGCGA 5138 Query 3218 AGTC-TGGTAT-CGGA-ACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGAT 3274 ||| ||| | || | |||| |||||||||| | ||||| ||||||||||| Sbjct 5137 AGTGGTGGGAGGCGCAGACGG-----AGCGCACGCGGCTGCTGCTGAAGTCGCGGCAGAT 5083 Query 3275 CGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGAC---CG 3331 ||| || || |||||||| || ||||||||||| | |||| || || || || Sbjct 5082 CGGGGCCACTTGGTACTTTGCCCGCGAGGCGCTGATACGCGCCATC---ACGGAGGGGCG 5026 Query 3332 TAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCAC 3391 ||||| || ||||| || || ||||| ||||||||| |||||| |||||| Sbjct 5025 CAATCAGATTTTCCTTTCTGCATCAAAGGCGCAGGCGCACCAGTTCAAGACGTACATGCT 4966 Query 3392 GCAGTTCGCGCGCGC-GGCGGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGA 3450 | || || || || || || || | ||||| | ||||| || ||| | || ||| Sbjct 4965 GGCCTTTGC-CGGGCTGGTGGGCG---TGGAGCTGAGCGGCGACCCTATCGTGCTGTCGA 4910 Query 3451 GCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3510 ||| ||| |||| |||| |||| || || ||| || |||||| | | |||| Sbjct 4909 ACGGTGCGGAGCTGCACTTTTTGGGCACCAATGCGAAGACGGCGCAGGGGCGCAGCGGCG 4850 Query 3511 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3570 ||||||||||||| || | ||||||||| || || ||| |||| |||||||| ||| Sbjct 4849 ACTTCTACTTCGATGAGTTCTTTTGGGTGTCGGGCTTTCGCCAGCTCAACAAGGTGGCCG 4790 Query 3571 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCA 3630 | | |||||||| |||||||| ||||||||||| |||||| ||| ||||| | | Sbjct 4789 CGGCCATGGCGACGCACAAGCATTGGCGCAAGACGTACTTCTCCACCCCGTCGGCCATGT 4730 Query 3631 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCA-CGCGAACCGCGGCCGCGCCGCGGGC 3689 |||| |||||||| ||||||||| |||| || | ||| ||| |||||| | |||| Sbjct 4729 CGCATGAGGCGTATCCGTTCTGGAACGGCACGGAGCGC-AACAAAGGCCGCAGCAAGGGC 4671 Query 3690 GAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3749 ||| |||| |||||| |||||||| |||| |||||||| | ||| || | Sbjct 4670 GAGGCCATCACCATCGACGTGAGCCACGCAGCGC---TGCGCGGCGGCATCCGCGGGGCC 4614 Query 3750 G--CGC-AGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGC---GGCTGCGAC 3803 | ||| ||||||| | | ||||| | |||| | ||| || |||||| || Sbjct 4613 GATCGCAAGTGGCGCGACGTGGTGAC---GATCGAGGACGCGGCACGCCTGGGCTGCAAC 4557 Query 3804 CTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTC 3863 ||||||||||||||||||||||| || |||| | || || ||||| || ||| | Sbjct 4556 CTGTTCGACATCGACGAGCTGCGGGAAGAAAGCAGCCCGGAAGAGTTCGCCAACCTGTAC 4497 Query 3864 ATGTGCCAGTTCATCGACGA-TTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTG 3922 |||||| ||||||||||||| |||| | |||||| ||| ||| |||| |||| Sbjct 4496 ATGTGCGAGTTCATCGACGACAGCGCTAGC-CTGTTCACGCTCAAGGAAATGCAGGGCTG 4438 Query 3923 CATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNNNNNNCGTT 3982 |||||| ||| ||||| | |||||| || | | || ||| Sbjct 4437 CATGGTGGACAGCTGGGAGGCGTGGGCG---GATTGCAAGCCGTTTGCCACGCGGCCGTA 4381 Query 3983 CG-GCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGC 4041 || || | | ||||||||| || ||||| || ||| ||| ||||| | |||| || Sbjct 4380 CGCGCACTTTC-CGGTGTGGGTGGGGTACGACCCATCGCACACCGGCGATGCTGCGGCGC 4322 Query 4042 TCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCATC 4101 | | ||||| |||| | || || | Sbjct 4321 TGGTGGTGATTGCACCGCCGCGGGCGCCGGGCGGCAAGTTCCGGCTGCTGCACCGGCAGC 4262 Query 4102 AGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCT 4161 ||||| || ||||| ||| | ||||| | ||| ||| |||||||||||| | Sbjct 4261 AGTTCAAGGGGGCGGACTTCGAGCAGCAGGCAGAGGCCATCCGCGCGATCACGCAGAAGT 4202 Query 4162 ACAACGTCGGCTACATCGCGATCGACACCA-CGGGCATGGGGCAAGGCGTCTACCAGCTC 4220 |||||| |||||||| |||||||||| ||||| ||||||| |||||||| ||| | Sbjct 4201 TCAACGTGACCTACATCGGCATCGACACCAGCGGGC-TGGGGCAGGGCGTCTATCAGAAC 4143 Query 4221 GTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGA--ACTACTCGCCCGAGGTGAAAACCC 4278 || ||||||||| || || | || || || | | ||| |||||||| | || Sbjct 4142 GTCATCAAGTTCTTTCC-GCAGGCG-CGGGCCTACCAGTACAGCGTGGAGGTGAAGAGCC 4085 Query 4279 GCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGAC-GCGGGC 4337 |||| ||||| |||| | || || || | || |||||| | | | ||| ||||| Sbjct 4084 GCCTGGTGCTGAAGGCCAAGCAGGTGATCGGCAAGGGCCGCTTTGAGATGGACAGCGGG- 4026 Query 4338 TGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGT 4397 || || ||| |||| |||||||| ||||| ||| || | ||||||| | || Sbjct 4025 TGCACGGATGTGGCAGCGGCGTTTATGGCCATCCGCAAGGTGCTGACGGCATCCCAGCGG 3966 Query 4398 CAGGCGACCTACACCGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTGGCGTGGGCG 4457 ||| ||||||||||| ||||| | ||| ||| | |||||||| || ||||| |||||| Sbjct 3965 CAGATCACCTACACCGCGGGCCGCAGCGATGAGGCCGGCCACGCGGATCTGGCCTGGGCG 3906 Query 4458 TGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCG--GCGGCATTCATTCATCTTCAT 4515 ||| |||| || ||||| ||| | | ||||||| | ||| | || ||| | Sbjct 3905 TGCATGCATGCCTTCGACAACGAATCTTTGGCCGGCGATGTGGCCGGC-GGCA-ATTCTT 3848 Query 4516 TCACGGAGTTT------TACGCATGAGCAA-gcgccgatcgcgcgcgccgcgcacgttcg 4568 | |||| || | |||||| |||| || | | || | | || ||| || Sbjct 3847 CGATGGAGATTTTTTGATGCGCATGCGCAAGGCAGCAACAGCCCACCCCCGCCACACCCG 3788 Query 4569 -cggccgcgcccaatccgagcgccggcagcgccgcgccggcgcgcgccg---AGGTCTTC 4624 | ||| || | || || ||| |||| || ||||| ||| | ||| ||| Sbjct 3787 TCAGCCAGGCACCGCCCTGGC----GCACCGCC-CGGCGGCGGGCGAGGTGCAGGCGTTC 3733 Query 4625 ACGTTCGACGATCCGACGCCCGTCATGAACCG-GGCCGAGATTCTCGATTACGTCGA--- 4680 || || | ||| ||| || || |||| ||| | ||||||||||| || Sbjct 3732 ACCTTTGGCGAGCCGGAGCTGGTGCCCCACCGCAGCC----TGCTCGATTACGTGGAAAC 3677 Query 4681 GTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGT-CAGCTTCGCCGGCCTGGCGAAAT 4739 | || || || ||| | |||| |||||||||| | |||| | | ||||||||| Sbjct 3676 GGCCT--TC-AATGGCAAGTGGTACGAGCCGCCGCTGCAGC-TGGACGGCCTGGCCCGCG 3621 Query 4740 CGTTTCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGT 4799 || | ||||| ||||||| || || | || || ||| ||| | |||||| Sbjct 3620 CGCTGCGCGCATCGCCGCACCACGGCAGCGCCATCTTTTTGAAGCGCAACCTACTGGCGG 3561 Query 4800 CGACATTCCGCCCGCAC-CGCTGGCTGTCGCGGCACG-CGTTC-GAGCGGTGGGCGCTCG 4856 | | ||| ||||||| ||| |||||||| | || ||||| | ||| | |||| | | Sbjct 3560 CCAGCTTCATCCCGCACAAGCT-GCTGTCGC-ACGCGACGTTCTGCGCGCT-GGCGTTGG 3504 Query 4857 ATTTCCTGACGTTCGGCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACG- 4915 | || || ||| | ||||| ||||| |||| || ||| | | ||||||| Sbjct 3503 ACTTTCTCACGCTGGGCAATGGCTACTTGGAGCGGGAGCGCTCC---CCCTTCGGCACGG 3447 Query 4916 --CTGCGGCTCGAGCC-CGCGCTCGCGAAGTACGTACGGCGCAAGGCGGATTTCAGCG-G 4971 ||| ||| | ||| |||| | |||| |||||| ||| ||| | | Sbjct 3446 ATCTG-GGCCTGCGCCATTCGCTGGGCCTGTACACGCGGCGC----GGGAAGGCAGGGCG 3392 Query 4972 CTTCGTGTACGTGAACGG--CTGGCAGGAGCGGCACGAGTTCGCGCCCGACAGCGTGTTC 5029 || | | |||| ||| |||| ||| |||||||||||||| ||| || | Sbjct 3391 CTATTTCTTCGTG--CGGCACTGGGGCGAGGAACACGAGTTCGCGCCGGACTCTGTCTGG 3334 Query 5030 CAGCTCGTGCGGCCGGAC-ATC--AATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGC 5086 ||| ||||| |||| ||| |||||||| |||||| |||| ||||| |||||| Sbjct 3333 CAG---GTGCGCGAGGACGATCTGGCCCAGGAGGTGTATGGCGTGCCGGAGTACCTGAGC 3277 Query 5087 TCGCTGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAG 5146 || |||| |||||| |||||||| | | || |||| || ||| ||| |||||| Sbjct 3276 GCGTTGCAGTCGGCCCACCTGAACGAGGCCGCCACCATGTTTCGCCGCCGGTACTACGAG 3217 Query 5147 AACGGCAGCCACGCCGGCTTCATCCTGTACATGACCGACGCCGCGCAGAAACAGGA-CGA 5205 ||||||||||| |||||||||||| ||||| ||| ||||||| || | | || | ||| Sbjct 3216 AACGGCAGCCATGCCGGCTTCATCATGTACCTGAGCGACGCCACGGTG-AGCACCACCGA 3158 Query 5206 CGTGGACA 5213 |||||||| Sbjct 3157 CGTGGACA 3150 Score = 313 bits (346), Expect = 6e-81 Identities = 629/916 (69%), Gaps = 35/916 (4%) Strand=Plus/Minus Query 778 CAGTTCGATGTTTTCGGCCACGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCGTT 837 |||||||||| ||| | | ||||| ||| ||||||||||||||||| ||||||| Sbjct 7773 CAGTTCGATGCCGTCGATGAGGGCGCCGCGGCCGTAGTCTTCGACCACGTAGTCGTCGTT 7714 Query 838 CGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCGTG-CGCCGGC 896 ||||| ||| |||||| | ||| || ||| | ||||||| |||| || |||| Sbjct 7713 GGACGACTCGAAGTTCTGCACCGCATCGACCTCGGGCGCGTCCTTCA-CGTGGCGGCGGC 7655 Query 897 GCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCT 956 ||||| | ||| ||||||| ||||| || |||||| | ||||| | || | || || Sbjct 7654 GCGCGGCGATCTGCCAGTAGATGGACAGGTTGGACAGCGTGGTGACGAGCACCTTGC-CT 7596 Query 957 TCGGG-AAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGATC 1015 ||||| ||||| |||||| ||||| |||| ||| | |||||| || | || | Sbjct 7595 TCGGGGAAGAAGGGCACGGTGACGGCGCGCAGGCCGCCTACGCGCTTTTGCGAGATGACC 7536 Query 1016 AGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTCGCGTTGACGATCGGGAAATACTTG 1075 ||||||| |||||| ||||| | | |||| |||||| | |||||| ||||| Sbjct 7535 AGATCGGTGGCGAGCGTTTCGGTGGCGGGCTGCTCTTGGTTGACCAGCGGGAAGAACTTG 7476 Query 1076 TCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGGAACCACGGG 1135 || |||| ||| |||||||| ||| |||||||| | | ||| | ||| |||||||| Sbjct 7475 TCATGCATGAGCCCGCGGCCGAGGATGGCGACGAGGTCGGGGTCGCCGTGGTACCACGGG 7416 Query 1136 TCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCC 1195 |||| || | || | | | || |||||||||||||||||||| ||| ||| | | Sbjct 7415 TCGAGCA--GCTGA-ATGCTGTCGTACACGAGCGCGTCGAGGTTCTTGTACTCGGC--GC 7361 Query 1196 TTGC--CGATGAGCACCTTGCCGGCCTGCTTCGCGCCTTC---GTGCAGCACGCGCTGCG 1250 | || || || ||||||| ||| ||| | || | || ||||| | Sbjct 7360 TGGCGTCGCTGCCCACCTTG------ATCTTGGCGGCGTCGGAGCCCATGACGCGGGCGG 7307 Query 1251 CTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTG 1310 | || |||||||||| ||||||||||| |||||||||| |||| ||| |||| | Sbjct 7306 CGGCCTTGTCGCGGTACTTCTGCAGCCAGCCCTTGTTCACGTCTTGCAGCAGGGGGTGGG 7247 Query 1311 CCTGACGGTCGGTCGTCGCGGCCG-CCTTCACGCCGTTCCAGCCGATCATGATGCGATCG 1369 | ||| ||| |||| | || |||||||| ||||||| | ||||| ||| Sbjct 7246 CGGCGAGGTTGGT-GTCGGGCTCGATGGAGACGCCGTTGAAGCCGATGGTCATGCGGTCG 7188 Query 1370 AGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTTCGCC 1429 |||||| | |||| |||| |||||||||||||| ||||||||||| | | |||| Sbjct 7187 AGCGCCTGGCGCTTGATGATCGCGTCGCGGATGCGCGTCTGGAAGTCGGGGCGGTGCGCC 7128 Query 1430 CACATGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAG 1489 || ||||||| ||| || | | | ||||||| ||| ||||| | ||||| |||| Sbjct 7127 CAGGCGTCGAGCAGGCGGTAGGTGAACTGCGTGTCGAAGTTGGTCTGCACGCAGGCGTAG 7068 Query 1490 ----CGGTTGCTGTCGA-GCGCCGTCGGGTCGATCGGTTGGCG--CGCGGCCTTCGTC-G 1541 ||||| | ||||| || ||| | | ||| | ||| | ||| || | | Sbjct 7067 CCGTCGGTTTCGGTCGATTCGACGTTGCG-----CGGCTTGCGGACCTTGCCGGCGGCTG 7013 Query 1542 TGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT 1601 ||| ||||||||| || || ||||||| ||| || ||| | ||| ||||| | | | Sbjct 7012 TGTTGGTGCGGCTGGCAATGGGGCCGGTGACGCCCACGCCCACCTTGTCGCCGGCCTGGT 6953 Query 1602 CGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTT 1661 | |||| | | ||||||| || ||| || |||||||||||| ||| Sbjct 6952 CATCCACGCCGATGATGTTGATGGAGGCCAGGAACGCGGACGATTCCTGCATGCGGCTTT 6893 Query 1662 CGAGCCGCTGTTGCAC 1677 ||||| || ||||| Sbjct 6892 CGAGCTTTTGCTGCAC 6877 Score = 179 bits (198), Expect = 9e-41 Identities = 291/418 (70%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 2187 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2246 |||| |||||||| | |||||| |||||||| ||||| || |||| |||||| | || | Sbjct 6296 GCTTGGCGGCGAACTCCAGCGCCTCGGTGCCCAGGCTGGCGGGGTTGTCGGTGACGGCCA 6237 Query 2247 GCCCGACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGA 2306 | || ||||| |||||||||||| |||||||||| ||||||||||| ||||| || ||| Sbjct 6236 GGCCCACGAGGTACGCCTCGCCGGTGTCGGCGAATTCGGGGTTGATCTCGATGGAGGTGT 6177 Query 2307 AGAGCTTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2366 |||||||||||| ||| |||| ||| | | | | || || ||| || Sbjct 6176 AGAGCTTCTGGCCGGCCTTGTTCAGCTCGATCAATGCCGGGTTGGGCGAGAGCTGGGCGA 6117 Query 2367 ACAGCGCCATCTTCCCTTTCAGCGGGCCGTCTTCGATTTCGGCCGCCTTCAGCGCGATCA 2426 | || || | |||| ||| |||| ||| | || | | ||| | || || Sbjct 6116 AGAGGGCGAGCTTC---TTCTTGCCGCCGATTTCCACCTCTTCGGTCTTGACGGCCTGCA 6060 Query 2427 CGTCGCCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCT 2486 ||||||| || |||| ||| || |||| || ||| | |||||||||||||| Sbjct 6059 CGTCGCCGTAGGCGCGGAAGGG-------GCCGTCA--GGCAGCACGCCCTTGATGTGCT 6009 Query 2487 CGACGTTCACGCGTGCGCCGTACAGCTTCGGGTCGTAGTGCTTCGCCATCTGCGTGAGCC 2546 | | | | | ||| |||| |||| || |||||||| ||||| ||| || Sbjct 6008 CCAGGCTGATGCGGGCGCTGTACGTGTTGCGGTCGTAGCTGGCGGCCATTTGCTCCAGGT 5949 Query 2547 ATTCACGCTTGATCTCGCGACCGTCGACGGTCGCGCCTTCCACTGCGACGCGGAAGAA 2604 | || | ||||| ||| |||||| ||| ||||||||||| |||||||||||||| Sbjct 5948 GGGCGCGTTCGATCTTGCGGCCGTCGGTGGTGGCGCCTTCCACGGCGACGCGGAAGAA 5891 Score = 100 bits (110), Expect = 7e-17 Identities = 187/270 (69%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 5283 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5342 |||| ||| ||||||| | |||| || ||| | |||| ||||||| || ||||| | Sbjct 3080 GCGGCAAGGCGGACGGCTTGAAGCTGATCCCCATCAGCGAGATCGCCGCCAAAGACGACT 3021 Query 5343 TCTTCAACATCAAGAACGTGACGCGC---GATGACCTGCTCGCCGCACACCGCGTGCCGC 5399 || | |||||||||| || || | ||| |||| ||||| ||||||||||||| Sbjct 3020 TCGCCGCCATCAAGAAC---ACCAGCATGGCCGACGTGCTGGCCGCCCACCGCGTGCCGC 2964 Query 5400 CGCAGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGC-ACGCCGGATA-CCGC 5457 | |||| |||||| | || | ||| |||| || |||||| ||||||| | | | Sbjct 2963 CCGGCCTGCTGGGCATCATCCCCAACAACACGGGAGGCTTCGGCAACGCCGGCGAGGCTC 2904 Query 5458 TGCACGCGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCACGCTTCGCCGAGCTGAA 5517 |||| || ||| | |||||| ||| |||| | ||||| ||| | | ||| || Sbjct 2903 TGCA--GGTCTTCATGGCCAACGAGATCGCGCCGATTCAGGCGCGCATGCGTGGGCTCAA 2846 Query 5518 CGACTGGCTCGGCGACGAGGTCGTGAGGTT 5547 || ||| | || | ||||| ||| |||| Sbjct 2845 TGAGTGGATGGGGGTGGAGGTGGTGCGGTT 2816 Score = 100 bits (110), Expect = 7e-17 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 398 GCGCTCGAACTGGTCGGGCAGCGTGAGCCCGTTCGAGAGCGCGTAGGCCGCGATCGCGAG 457 ||||| | | |||||||||| | | |||| | ||| |||||| ||||| | ||| Sbjct 8210 GCGCTGGTAGTGGTCGGGCATGGGCATGCCGTGCTGCAGCACGTAGGGGGCGATGGTGAG 8151 Query 458 CGCGCCGTCGAAGTCGCCGGCGTCGATGCGCCAGACCATCACCGTCACGAGCACGTCGTC 517 ||| | || || |||||||||||||| ||| ||||| || |||||| |||| Sbjct 8150 CGCCAGGGCGTAGGCGCCGGCGTCGATGGCCCACACCATGCAGGTGGTGAGCACCGCGTC 8091 Query 518 CTGCGCGCCGCGGCCGCCGCTCAACACGCCCGCCACATAGTCGGCGTACTCCGGCAGCAG 577 | ||||||| ||||||| | | | |||| | | ||||| |||| | |||||||| Sbjct 8090 TTCGGCGCCGCCGCCGCCGGTGAGCGCGCCGCCGATCCAGTCGAGGTACGCGGGCAGCAG 8031 Query 578 CTT-GCGTTTCAGCTCGATCTTCCNNNNNATCGACTGAATGCCCTTGAGCGCGCGGCGGT 636 ||| || || | | | ||| | ||||| ||| |||| | ||||| || Sbjct 8030 CTTGGCCTTGGTGGT-GCGCTTGAGCTGGACGGACTGGATGGCCTTCAAGGCGCGCTTGT 7972 Query 637 CGGCCGCGAGCTTCGCGAGCATCAGCT 663 |||| ||||||||| | ||||| |||| Sbjct 7971 CGGCGGCGAGCTTCACCAGCATGAGCT 7945 >seq8333 Length=1724 Score = 351 bits (388), Expect = 2e-92 Identities = 739/1083 (68%), Gaps = 52/1083 (5%) Strand=Plus/Plus Query 24344 AAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGA 24403 || ||||| ||| || |||||||||| ||| | |||||| || || || ||||| Sbjct 627 AACTCGGCCAGGTAGGTGTCGGTGATGGATTGGTTGAACACCAGGTTCTCCAGCGGCGGC 686 Query 24404 ACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGT---G 24460 ||||||||||||||||| ||| | | |||| || || ||| || | | Sbjct 687 ACCGGCGTGTAGTCGTAGCTGATCTGCAGGCGGCCGACGGCCAG---GTCTTCCTTGCCG 743 Query 24461 TTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGC 24520 ||| | || || |||| |||| | | ||||| || |||||| |||| | | Sbjct 744 TTCAGATCGGGGTCGAAGTACGCATTGGCCCCGATGAGATAGCCGCCATTGACCAGATCG 803 Query 24521 CGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCG 24580 || || | || ||||||| ||| ||||||||| | ||||| || | || || | Sbjct 804 CGGAAGCGGCTGTTGATGTAGCCCAGCATGTCGCGCACCAGCGAGGGGTGCATGGGCTTG 863 Query 24581 TCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTG 24640 |||| || | | |||||||| ||||| | ||| | |||||| |||||||| ||| Sbjct 864 TCGATGAAGACGAAGTGCGCTTCTGCGATGGTGTCGGCCAGCACCTGGGCGGTGCGGGTG 923 Query 24641 TAGTTCTCGAACGCGAACTT-----CGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACC 24695 ||| ||| || |||||||| ||| || || ||| |||||| |||||||| | Sbjct 924 TAGGGCTCAAAGGCGAACTTTCCGCCGG--CGGCCTCGCAGGTGCGCGAACCCCAGAAGC 981 Query 24696 GGAAGCCGTTGCGGTTCACGAGCGTCGTCACTT-CGTGCTCGTTCAGGTAGCCCGCATCG 24754 || | |||| ||| | ||||| || |||| | |||| ||||||||||||||||||| Sbjct 982 GGTATCCGTCGCGCCGAATCAGCGTGGTGACTTCCTTGCT-GTTCAGGTAGCCCGCATCG 1040 Query 24755 GTCGCCGGGTCCTGCAAATCCCACGACACGTCG-GCGCTGATGCCGGACACGCCGTTCAC 24813 | |||||| ||||| || | |||| ||| ||| ||||||| ||||||||| || Sbjct 1041 CTGGCCGGGCTCTGCAGGTCGAAGAACACATCGCGCG-TGATGCCTTCCACGCCGTTGAC 1099 Query 24814 GACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCC 24873 || | || ||||| | |||||||||||| || || | || | ||| ||||||| ||| Sbjct 1100 CACCATGTTGGAAATGGACTTGTGCCAGCCAATCTCCTGATCCAGCTTGGCGCGCAGGCC 1159 Query 24874 GGCGGCGATCGCCGGCGCCGGG-ATGACAGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGA 24932 ||| || | || || |||| | | | | | | || | | |||||||| | | Sbjct 1160 CAGGGC-ATAGGCGACGGCGGGCACCTCCACGGCCTCGCCCGCCTCGCCGTCCCAGGCCA 1218 Query 24933 GCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTA---CGCGG 24989 | ||| ||||| |||||||| | ||||| || ||||||| |||||| | ||| Sbjct 1219 GGAAGTTGGGCCACATCACCATCACCTCGCGCTGCCCGAACTCGCCGCGGTAGAGCACGG 1278 Query 24990 CGGCTTCTT--------------CCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCAT 25035 ||||||| | | ||| ||| |||| ||||| || |||| | Sbjct 1279 CGGCTTCCTTGGTGGCGGCATAGGCATCG--TTGGCGCCGCGGGCCGAAACGTAGGTGAA 1336 Query 25036 CGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCC 25095 ||||| ||| |||||| | ||| | || | ||||| | || || || ||||| Sbjct 1337 GGCGCGGAGCTGCTGCGCCACGGACGCCATGGCCACGGCCACGGCCTTGGTGTCCAGGCC 1396 Query 25096 GGGCGCCGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTT 25155 |||||| ||| ||||||||||||||||| | |||| || || ||||| |||| Sbjct 1397 GGGCGCGCCGATGATGCGCGGCTTCACGCCCAATTGCCCCTCGGCCGCCAGCAGGGCCTG 1456 Query 25156 GATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCTCGTC 25215 | ||| ||| || |||| || || ||||||||||||||| | | || || | Sbjct 1457 CAGGCCGGTGCGCTGGCCGGCCTCGGTGGTGGTGCCGATGACGTTGGTTGCGGTTTCCGC 1516 Query 25216 GGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTC-TGCTTGCCGA 25274 |||| |||||||||| |||||||| || || || | ||| | | ||||||| || Sbjct 1517 GGCGGTGGTGCCTTCGGCCACGCGCACCACCACCGTGA-TGGCGCGGGCTTGCTTGCTGA 1575 Query 25275 TCGCGTCGAGCGTG-CGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGA--GCGCCGCGA 25331 | ||||| |||| | ||||| |||||||| | |||||||||||||| |||||| | Sbjct 1576 TGGCGTCCAGCGCGCCGGCG-AGCGTGCCGCCCGCGCCGGCCTTGCCGATGGCGCCG-GC 1633 Query 25332 CGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCG 25391 || ||| ||||||||||| || || ||||| ||||| |||| |||||||||| Sbjct 1634 CG-GGTTGGTCAGCAGCACCGGTACGTTCAGCGGGAACGC-CTCG-----GCGTCGGCCG 1686 Query 25392 CCG 25394 ||| Sbjct 1687 CCG 1689 >seq7410 Length=1926 Score = 122 bits (134), Expect = 2e-23 Identities = 765/1192 (64%), Gaps = 86/1192 (7%) Strand=Plus/Minus Query 28704 ACGTGTAGTGCGCGGTGCCGCG-CTTGGCCCGGTCGACTTCGGCGATGATGTCGGCGACG 28762 ||||| |||||| | || ||| |||| | ||| || ||||| || | |||||| ||| Sbjct 1586 ACGTGAAGTGCGAGC-GCAGCGGCTTGACGCGGGACACCTCGGCCATCACGTCGGCCACG 1528 Query 28763 TATTCGGCGGTTGCCGGGATGCCGTCGCGCGCGCCGACCGTCATCAAGATTTCGAACGTG 28822 | |||| | || | ||||| | || | ||| | || | ||||| ||| Sbjct 1527 AAAGCGGCACT------GACGTTGTCGCCCTCGGTCATCGTGAACACCAGCTCGAAGGTG 1474 Query 28823 CCCGGCCGGCCCTTCGGCGTCTTCTCGAACCACTCGCGCATCGCGACGTTCGCGCCGAAC 28882 |||| |||||| |||| ||||| |||||||||||| |||| | | ||||||| Sbjct 1473 TGCGGCGTGCCCTTGGGCGACTTCTGCCACCACTCGCGCACGGCGATCTGCCCGCCGAAG 1414 Query 28883 GACGCGCACACT-TCGCGCACGGCCGCGGCCGTGCCTTTCTTGCGCGCGATCCGGATCGC 28941 | || ||| | ||||||||| ||| ||||| | |||| | |||| || Sbjct 1413 GCGGC-CACGGTGTCGCGCACGCTGGCGAGGGTGCCGCGCCGGCGCTGCACTTGGATGGC 1355 Query 28942 CGCTTTCACGCGCGCGCGCTTCACCTGTTCGGGCCAGTAGTCCTTCCACGTCTCGACGCC 29001 |||| |||||||| | | |||||||||| | | ||||| || ||||| Sbjct 1354 GTTGCGCACGATGGCGCGCTTGATGTTCTCGGGCCAGTCGGCGCGCCACGCTTCCACGCC 1295 Query 29002 GAGGTGCCACGCGAGCCAAGGCAGAAACCGCAGCGGGATCGCGTCCGGGTCCATCAGCGC 29061 | ||||| || ||||| ||||| | | ||||||| | | |||| | |||||| Sbjct 1294 CATCTGCCAAGCCAGCCAGGGCAGCAGCTCCAGCGGGCAGGTGCTGGGGTTCCACAGCGC 1235 Query 29062 GCCGATGTCGACCGG--GATGTC--GCTGAT-GCGCGCGTTCGTGTCCGCGAGCCG-GCG 29115 || | || || | || |||| | || | |||| || | | || || |||| ||| Sbjct 1234 GCGG-TG-CGGCTGGTCGATGGCCTGCAGGCCGCGCACGGCCACGGCCTCG-GCCGCGCG 1178 Query 29116 CTCGAGCGCGGTCGCGTTCGGCGGCAGCAGCGA------------GGTTGCC-CGTCTAG 29162 || |||||||| ||||| ||||||| || || ||| ||| |||| || Sbjct 1177 GTCCAGCGCGGTGGCGTTGGGCGGCAAGAGGGACACCGCCGGGGTGGTGGCCGCGTC-AG 1119 Query 29163 TCATCCGCCACCCCGCCGTCGATCAGCTCGATTCCGGTGCAGTACGGC--GCCTGCTCGT 29220 ||| | || ||||| | ||| || ||||||||| ||| |||||| Sbjct 1118 TCAACGGCACCCCCGAAGGTGATGGTGGCGG---CGGTGCAGT--GGCTGGCCTGCGTAG 1064 Query 29221 GCGTCACGGGCACGCCGCCGGC-GGGCGAGTCGAGCAGCACCTTTTGCACGCCGGCGACG 29279 || ||||| |||| | |||| |||| || ||||| ||| ||| || ||| | Sbjct 1063 GCCCCACGGCCACGTCTGCGGCCGGGCTGGT-GAGCACCACGCGCGCCACACCTTCGATG 1005 Query 29280 CGCATCGCCGCGTGCAGGCCGTCGAC--CGTGATTTCCATGCCGATGCGCCGCATGTCCG 29337 ||| || || | | ||| |||| |||| | ||||||||| ||||| || Sbjct 1004 TGCAGGGCGGCATAGATGCC--CGACAGCGTGGGCTGGCGGCCGATGCGGTGCATGGCCT 947 Query 29338 CCGCGAACTTCGCGGTG-TGCTTGCTGGCTTCCGCGAGCGC-CACGCCGC--GA-TCCGG 29392 ||| | |||| | ||| |||||| | || || ||||| | || ||||| Sbjct 946 GCGCATAG---GCGGCGATGC--GCTGGCGTGCGGTGGCAATCACGCTGGTGGAGTCCGG 892 Query 29393 GCCGGAGAAGAAGCG----CAGCGTCGCGCGGATCGCATACGGCACGACTTGC--GCGCT 29446 || | | |||| || || ||| ||| || || ||||||| ||| ||| Sbjct 891 CCCCG----GCAGCGTGTACACGGTGGCGGTGATGGCGTAGGGCACGA--TGCCGGCGGC 838 Query 29447 CTGCACGATCACCTGGTCGGTTTGCGGGCGCACGCCTTCG------AGCGCCGCGCGCAC 29500 |||||| | ||||| |||||| ||||||||||| | ||| | || ||| ||| Sbjct 837 CTGCACCACCACCTCGTCGGTGAGCGGGCGCACGTCGTCGGCATTGACGGCGGCGGCCAC 778 Query 29501 GATGTCGATGAGCGCGTCGCTCGCCGTGCCGTCGCCTTCGCGCGACAGGACCGTGACAAC 29560 | | | || ||| | | | | ||| ||| ||||||||||| |||| || || Sbjct 777 CTTCGCCAGCAGGGCGGCCGTGGGCACGCCCGTGCCGTCGCGCGACAGCACCGACACCAC 718 Query 29561 CATCACGCACGG-CTCGGGACTGCGCGCGGACGCGGACAGCACGCGGCCGTCCGCCGCGC 29619 || | ||| ||| | || ||| || | ||| |||||| ||||||| |||| Sbjct 717 CA-CGCGCCCGGGCGATGGGCTGGTGGCCGCAGCGTCCAGCACCTGGCCGTCGGCCGTCT 659 Query 29620 GTGCATGGAACACGTACGCTTCTTCGGGGCCGGCGACGGAGAAGCCGCGCGGCGCGAGCT 29679 || || |||||||| || | | |||||||| ||| | |||||||||||||||||| Sbjct 658 TGGCGTGAAACACGTAGGCGCCCACCGGGCCGGCCACGCTGTAGCCGCGCGGCGCGAGCT 599 Query 29680 GCACGCGCTCGCGCAGACTGTCGTCGTCCTCATAGACC---GC----ATCGATACCGTGC 29732 | | ||||||||| | ||| || | || ||| || || || | | Sbjct 598 GGATGCGCTCGCGGAAGGCGTCATCAGCTTCCATCACCTGGGCGACGGGCGGCACGGCG- 540 Query 29733 TCCGGATCGGCCGCCGTGACCACGAGCCGTTCGACATCGAACAGCGCCGCGATGTGTTCG 29792 | || | ||| | ||||||||| ||||| | || |||| | ||| ||| || || Sbjct 539 TTGGGGTTGGCGGGCGTGACCACCAGCCGCTGCACCCCGAAGAACGCGCCGAGCTGGTCA 480 Query 29793 AGCGTC-GTGCCGCGCGCGTAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTG 29843 || ||| | ||||| |||||||| |||| | | || |||| |||||||| Sbjct 479 AG-GTCTGCCCCGCGGGCGTAGGCCAGCATGACGGCGTGCGCGCTGTCGTTG 429 >seq1720 Length=6403 Score = 120 bits (132), Expect = 7e-23 Identities = 189/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 25210 CTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTT 25269 |||| |||| | | ||| ||||| |||||||||||||| || ||| ||||| Sbjct 6327 CTCGGTGGCGCCTTCGCCATCGGCCACGCGCACGACGACCAGCACCGGGCGGCACTGCTC 6268 Query 25270 GCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGC 25329 ||| |||| |||| || ||||||||| || ||||||||||||||| ||||| Sbjct 6267 CTTGATGGCGTTCAGCGCCTGGGCCAGCGTGCCCTTGGTGCCGGCCTTGCCGATGGCCGC 6208 Query 25330 GACGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGC 25389 |||| || || | |||||| || || ||||| || | | ||| || |||||| Sbjct 6207 ATCGACCTTGGTGACCAGCACCGGACGGTTCAGCGGGAAAGTGGCCGCATCGGCGTCGCT 6148 Query 25390 CGCCGTGCAGACGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTC 25449 |||||| |||| ||||| ||||||||| ||||| ||| || | | |||||| Sbjct 6147 GGCCGTGGCCACGAGGCCGATCACGGCCGTGGACACGATGCGGATGGAATTGATGCCTTC 6088 Query 25450 GTTGATTTCGATGACGCGTACGCCGTGGTGG 25480 | | | ||| ||||||| | ||| || ||| Sbjct 6087 GCTCACTTCCGTGACGCGAATGCCATGATGG 6057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117236902133736