Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq6689 86.0 1e-12 >seq6689 Length=2121 Score = 86.0 bits (94), Expect = 1e-12 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 25558 CAGCTCGACGATTACTTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCT 25617 |||| | || ||| || || || ||||||| |||| || ||||||||| ||| Sbjct 1970 CAGCGAGCCGCTTAGTTTACAGCATCCTTCAGGGCCTTACCAGCCTTGAACGACGGATTC 1911 Query 25618 TTCGACGCTGGAATCTTGATTTCTTCGCCGGT-TGCGGGATTGCGTCCGGTGCGGGCGGC 25676 ||||| || | |||||||| |||||||| | |||| ||||| ||||||||||| || Sbjct 1910 TTCGAAGCAGCGATCTTGATGGTGTCGCCGGTCTTCGGG-TTGCGGCCGGTGCGGGCAGC 1852 Query 25677 CCGCGCGCCCACGCTGAATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAG 25736 || ||| || ||| ||||| || ||| || |||| ||||| | ||| Sbjct 1851 ACGGTCGCGGACCTGGAAGGTACCGAAGCCAACCAGGGTGACCGCATCGCCGTCCTTCAG 1792 Query 25737 CGACTTCGTGATGCCTTCGAGAACGGCTTC--CAGCGCAAAGCCGGAGTCGGCTTTCGTC 25794 || ||| |||| | | | | ||||| || |||||| || ||| ||||| || ||| Sbjct 1791 CGCCTTGGTGACGGCAGCAACGACGGCATCGACAGCGC--GGCTGGACTCGGCCTTGGTC 1734 Query 25795 AGGCCCGTTTCCGCTGCCACGTGATTGATCAGGTCCGATTTGTTCAT 25841 ||| | | | | || ||| || ||||| || | |||||||| Sbjct 1733 AGGTCTGCAGCTTCAGCAACGGCATCGATCAATTCGGTCTTGTTCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119655081169344