Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1969 118 9e-22 seq2111 82.4 7e-11 >seq1969 Length=5862 Score = 118 bits (130), Expect = 9e-22 Identities = 187/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 |||||| ||||| || || ||||||||||| | |||||||| | || | || Sbjct 2113 CGGAAATGGACGCGGTGTACGCGTCAGCTGTTGTAAAAGTGGCTCCACGTGGTTCAAATA 2172 Query 20194 GATGTGGGCATCTCCCA--ACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGA 20251 | ||| ||||| || | || ||| ||||||| || ||| | || || || || Sbjct 2173 CACGTGTGCATCACCAATTACATGT--ATAAACTTGCCTGGTTTTAGCCCTACCACTTGC 2230 Query 20252 GCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATG 20311 || | || | || | || | ||||||||||||||||| || || || | |||||| Sbjct 2231 GCTACCAAACGCGTCAGAAGCGCGTAGCTGGCAATGTTAAATGGCACGCCAAGTCCCATG 2290 Query 20312 TCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACAT 20371 || | |||| ||| |||| ||| || || |||||||| || ||||| || || ||||| Sbjct 2291 TCGGCTGACCGCTGGTACATCTGGCACGACAGCTCACCATCTGCTACGTAGAACTGACAG 2350 Query 20372 AACAAGTGACAGGGCGGAAGCGCCAT 20397 |||| ||| || || || |||||||| Sbjct 2351 AACATGTGGCACGGTGGTAGCGCCAT 2376 >seq2111 Length=5547 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTA 20236 || ||||| | || |||||||| || || || || || || ||||| || || ||| | Sbjct 3429 TCAATATGGTTGTTATAGATGTGCGCGTCACCAAAAGTATGGATAAAATCTCCCGGTTTT 3370 Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 | | | ||| ||||||| ||| | || || | | ||| || ||||||||||| Sbjct 3369 AAATCGCAAACCTGAGCAATCATCAATGTCAATAATGCATAAGATGCTATGTTAAAAGGC 3310 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||| ||| || || | || ||||| | ||| ||||| | | || || ||| Sbjct 3309 ACTCCTAAAAAGATATCGGCGCTTCTTTGATATAACTGGCAGGATAATTTGCCATCTGCT 3250 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGC 20394 |||||||| ||| | || ||| ||||| ||||| || Sbjct 3249 ACATAAAACTGAAAAAAGGCGTGGCAGGGTGGAAGTGC 3212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441176725650760