Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq28136 84.2 2e-11 >seq28136 Length=407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 |||| |||||| || || | || ||| ||||||||||||||||| |||| | || || Sbjct 229 AGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTG-CG 171 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||| |||||||| ||||||||||| || ||||| || ||| | | || Sbjct 170 TCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTC 111 Query 34029 TTTGTCCATAATTTT 34043 ||||||| ||||| Sbjct 110 TTTGTCCTGGATTTT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396890419742278