Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq1131 168 1e-37 seq4681 122 2e-23 seq7880 114 3e-21 >seq1131 Length=8710 Score = 168 bits (186), Expect = 1e-37 Identities = 349/509 (69%), Gaps = 28/509 (6%) Strand=Plus/Plus Query 13641 CTCCATGTCCTGGAACTTGAACACAGACAGGGCA-TCGTCGATAAAGCGGCACATGTAGA 13699 || ||| |||| || | |||||| | || || |||||||| || ||||||||| | Sbjct 4443 CTGCATTTCCTTGAGCGTGAACAG-GCTAGCGCTGTCGTCGATGAACTCGCACATGTACA 4501 Query 13700 GGCGGTCGAACACCTCCTCCGGG-TACT--CGTCCTTGAGCTCCTCGATGTCGATGAGGT 13756 || | ||||| || |||||| | || | ||| ||||| |||||||||| |||| Sbjct 4502 GGTTGGCGAAC---TCTTCCGGGCTGCTTTCTTCCCGCAGCTCGTCGATGTCGAACAGGT 4558 Query 13757 GGCAACCGAGGCGAATGGCGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGG-- 13814 ||| || ||||| ||||||||||| || | |||| |||||||| | || | Sbjct 4559 TGCAGCCCAGGCGTGCCGCGTCCTCGATCGTCACCACGTCGCGCCACTTGCGATCGGCCC 4618 Query 13815 -GCAGATGCGGCCGC----CGTCGCGTAGGTCATCTTCACCAGGGAAGTCGATGGCCACC 13869 || ||||| ||||| || |||| | ||| | || || | ||||||| | Sbjct 4619 CGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCA-CGTC------GATGGTGATGGCCTCG 4671 Query 13870 CGGCTCGGCCGCTGTCCCTTCCAGCGATCC---CCGGTCCAGAACCGGTACGCCTCGTGC 13926 | | || || | || || ||| ||| ||| |||||||| | |||||||| ||| Sbjct 4672 CCCTT--GCTGCGG-CCTTTGTTGCGCTCCGTGCCGTTCCAGAACGGATACGCCTCATGC 4728 Query 13927 ACCTTGCTCGACGGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCA 13986 | || ||||||||| |||||||| ||||||||||| || | || ||||||||||| Sbjct 4729 GACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAATGCTTGTGCGTCGCCATGGCC 4788 Query 13987 CTGGCCACATCAGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACG 14046 |||||| | |||| ||| | | ||| ||| | || |||| ||||| | Sbjct 4789 GCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAAAGAACTCATCGAAGTAGAAG 4848 Query 14047 TTGCCGGAGCGGGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCG 14106 | |||| ||| ||| || | || | |||||| | ||||||||||| || ||| Sbjct 4849 TCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCAAAAAGTGCAGCTCCGCACCG 4908 Query 14107 TTCGACAGCACGATGGGGTTGCCGGTCAG 14135 |||||||||||||| |||| |||| |||| Sbjct 4909 TTCGACAGCACGATAGGGTCGCCGCTCAG 4937 >seq4681 Length=2880 Score = 122 bits (134), Expect = 2e-23 Identities = 218/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 6814 GCAATGCCAACCCGGTCAACCGCCGAGCCGAGATGATGACCCGCATGCGTGGCTTTGAAG 6873 ||| |||||||||| ||| |||| | | |||| ||||||| ||||| || || || | Sbjct 1077 GCATTGCCAACCCGATCATCCGCGGCGGCGAGCTGATGACGCGCATACGCGGTGCGGAGG 1018 Query 6874 ACTACGCCGAGGAGCAGGGCCATGTGGGGGTGTTCTTTACCTGGACAGCCCCGAGCCGCT 6933 | ||||| || | || || |||||||| ||||| ||||| ||| || ||||||| Sbjct 1017 AATACGCGGATGCGCGCGGGCATGTGGGCCTGTTCCTTACCCTGACCCTTCCCAGCCGCT 958 Query 6934 TCCATGCCTGGAAGACGGGCCGCAACGGCAAGACCATTGAAAACGACAAGTACCAGGGCG 6993 |||| || |||| |||| || |||| | ||||| ||| | || ||| | |||| Sbjct 957 TCCACCCCGTGAAGCTGGGCAGCGGCGGCCGGCCCATTCCCAACAAGAAATACGACGGCG 898 Query 6994 CCACCCCGCGCGA----CACCTGCGCCTATCTGGGCCAGCTCTGGAGCCGGGCCCGTTCA 7049 |||| || ||||| || ||| | ||| || | ||| | | || ||| Sbjct 897 CCACGCCCCGCGATGGGCAGCTG----TGGCTGCGCGACAAGTGGTCTAGAACGCGCTCA 842 Query 7050 TACCTGAAGCGCTGGGGCATGCCTATCTATGGCTTCCGGGTTTGTGAGCCGCACCACGAT 7109 |||| |||| |||| ||| || |||||| | || || |||||||| ||||| Sbjct 841 GCCCTGGCGCGCAAGGGCGTGCGCATGTATGGCCTGCGCGTGGCCGAGCCGCATCACGAC 782 Query 7110 GGCACGCCGCACTGGCAC 7127 | ||||||||| |||||| Sbjct 781 GCCACGCCGCATTGGCAC 764 >seq7880 Length=1825 Score = 114 bits (126), Expect = 3e-21 Identities = 126/166 (76%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 |||||||| | ||||||||| || || | ||| ||||||||||| ||||| | || Sbjct 523 ACCGCATCGTGCAGGTGGTCTGGTGCAAGGTGCGCATAGCGCATGGTCATAGCCAA--CG 466 Query 736 GT--GTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGAC 793 | ||| || ||||| ||| || ||||||||| || |||||||||| |||| | | Sbjct 465 ATTGGTGACCAAGGATTTTCTGCAGGGTCAGGATGTTTCCACCGTTCATCACGAAGCGGC 406 Query 794 TGGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCAA 839 | ||||| || ||||||||||||||||| ||| ||||| ||||| Sbjct 405 TAGCGAACGTGTGGCGCAGAACGTGGGTAGCCTGACCTGCAGGCAA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108584555187546