Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq23296 86.0 3e-12 >seq23296 Length=550 Score = 86.0 bits (94), Expect = 3e-12 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 58392 TACAAAGCGCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCG--ACTTAGCAGAGG 58449 |||| |||||| | ||| ||||| ||| |||||||| | || | | || ||| Sbjct 311 TACAGCGCGCAGGACACGCAGCCTTCTGTTTCGGTGCCTTCCAGCGCAAGCTGGCGCAGG 252 Query 58450 TTCGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAA 58509 || ||||||||||| | || | || ||||| || || ||||||||| || | Sbjct 251 --CGAATGTAGTACAGGGTTTTGATCCCTTTCTTCCACGCATAAATCTGCGCTTTATTGA 194 Query 58510 TGTCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTAC 58567 |||| || || || || ||||| |||||||||||||| || |||| |||||||| || Sbjct 193 TGTCGCGGGTGGTAGCGGTATCCGGGAAGAACAGCGTCAGCGACAGCCCCTGGTCGAC 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225630230078660