Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14623 136 9e-27 seq28136 129 1e-24 seq19645 118 2e-21 seq32362 114 3e-20 seq25614 113 1e-19 seq7414 111 4e-19 seq34320 107 5e-18 seq691 102 2e-16 seq2166 100 7e-16 seq20474 98.7 2e-15 seq34564 91.5 3e-13 >seq14623 Length=969 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || ||| ||||| ||||| ||||| || || || || |||||| Sbjct 473 AGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCT 414 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| || || |||||||| || || | ||||||||||| || ||| Sbjct 413 TCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCC 354 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATC 288438 ||||| || ||||| || || || || | ||| |||| || ||||| | ||| ||| Sbjct 353 TGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTC---TCAACTTCCAACGTTATC 297 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || |||||||| |||||||| Sbjct 296 GTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 134 bits (148), Expect = 3e-26 Identities = 175/238 (74%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | |||| ||| || |||||||| || | Sbjct 264 CATG-CCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAAT 206 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || ||||| | || ||||| || || |||||||||||||| | Sbjct 205 CGGCAAGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGG---T 149 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 | ||| || ||||| |||||||||||||| || || || || || || | || || Sbjct 148 CCGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGC 89 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 88 TC---TCGACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCAT 34 Score = 96.9 bits (106), Expect = 8e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || || || | ||| |||||| ||||| || || | Sbjct 720 CATG-CCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAAT 662 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || | || || || | || ||||| || ||||| | |||||| || | Sbjct 661 CGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAG 602 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 || || || ||||| |||||||| || || || || || || |||| ||| |||| Sbjct 601 GGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTC- 543 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||||||||| || || || || || || || |||||||| Sbjct 542 --TCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq28136 Length=407 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || || |||||||| ||||| || || || || || || Sbjct 202 TCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAAT 143 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| || || ||||| |||||||| ||||||||||| || ||||| || Sbjct 142 ATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTG 83 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| ||| ||||| | || || ||||| || ||||| ||||| ||| Sbjct 82 TCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACG 23 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 22 AAGATCTGCAT 12 >seq19645 Length=690 Score = 118 bits (130), Expect = 2e-21 Identities = 146/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| ||||| ||||| || || || | || || || ||||| Sbjct 310 TCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAT 251 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || || ||| || ||||| || |||||||| ||||| || || Sbjct 250 ATCAGCCTCTGCTGG---TCCGGGGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 194 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||||||||| ||||||||||| || ||| Sbjct 193 TTGTCAATCGTGTCGGAGCTC---TCCACCTCGAGCGTGATGGTCTTCCCGGTAAGGGTC 137 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 136 TTCACGAAGATCTGCAT 120 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || || ||||| || ||||| || Sbjct 574 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 515 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || |||||||| | ||| || || Sbjct 514 AGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGA 455 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || |||||||| || || || ||||| || || | ||| ||| || Sbjct 454 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTC---TCC 398 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 397 ACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 348 >seq32362 Length=298 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| ||||| ||||| || || || || || || | ||||| || || || Sbjct 197 TTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAA 138 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | ||| || ||||| || ||||| ||||||||||| ||||| Sbjct 137 TATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTT 78 Query 288402 TTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | |||| ||| || || || || ||||| ||||| || |||| ||||| Sbjct 77 ATCAATCGTATCGGAGCTC---TCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTCTT 21 Query 288459 GACGAATATCTGCAT 288473 || ||||||||||| Sbjct 20 CACAAATATCTGCAT 6 >seq25614 Length=477 Score = 113 bits (124), Expect = 1e-19 Identities = 130/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || || ||||| || || || ||||| || | || ||||||||||| Sbjct 307 TTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAA 366 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||||||| || ||||| ||||| || |||||||| || ||||| || || Sbjct 367 GATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATT 426 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || | || |||| || |||||||| ||||| ||||| ||||| || Sbjct 427 GTCAATGGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTCTTACCGGTGAG 477 >seq7414 Length=1926 Score = 111 bits (122), Expect = 4e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 288250 CCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGC 288309 ||||| || | ||| || || || | ||| || || || || || |||||| | | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 ||||| || || || | || || || ||||| |||| |||||| || | || || Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || |||| |||||||| || || || || ||| || || || Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCA 180 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 181 AGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCAT 224 >seq34320 Length=242 Score = 107 bits (118), Expect = 5e-18 Identities = 139/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||||| | || || || || || | || || || ||||||||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || | ||| || ||||| ||||| || |||||||| || || || ||||| || Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 288406 ATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | || |||| || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 121 ATGGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 177 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 178 AAGATCTGCAT 188 >seq691 Length=12351 Score = 102 bits (112), Expect = 2e-16 Identities = 242/360 (67%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 325157 GACCATCCGGTTCCGATACCACTCGAT-CCATTCACCAGGATACTCGGAATAACAGGCAC 325215 ||||| || || |||||||| ||| | || || || || | | ||||||| || | Sbjct 9144 GACCAACCCGTCCCGATACCG-TCGCTGCCGTTGACAAGCACCATGGGAATAATCGGGAT 9202 Query 325216 ATAATACTCTGGTTCGATCTTATCGCCGTCGTCGTACATATATTTCAGAAGATTGTCGTC 325275 || |||| ||||||||| | ||| || || | || || || |||| || || ||| Sbjct 9203 GTACCACTCAGGTTCGATCGACTGGCCATCTTCATCCAGGTACTTGAGAATATCGTTGTC 9262 Query 325276 C---GTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTCatatatatatatCGTGC 325332 | | |||| ||| || || || | | | ||| ||| | | || || || || Sbjct 9263 CAGAGGATCGT--AAATTCTA-CGCGTGAGTTGTTCCAGATTCGTGAAAATGTAACGAGC 9319 Query 325333 ACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCA 325392 ||| || |||||| || ||| || | || ||| |||||||| |||| ||| Sbjct 9320 ACTGGCTGCATCCTTGCCGCCCATTAAACGCGTACCAAACTGGCCGATCGGCGACAGAAG 9379 Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 || ||||| ||||||||||| |||||||||| | ||||||||| || || | | Sbjct 9380 GTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATGTTCACGATACAGCCCTGTAAACT 9439 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 | ||||||||| ||||| || |||||| | ||||| || | ||||||||||| Sbjct 9440 TTGTTCGCCATGATGATACGCAGAATGCTCCGACACGTAGCCAGCCAGTTGTGCAACCTT 9499 >seq2166 Length=5462 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | ||||| || || || || | || || || || || | Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||| ||||| || | || || ||||| || |||||||||||| || || || | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTGT 893 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| || || || || | |||||| ||||| |||||||| ||||| || | Sbjct 894 CAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACAA 953 Query 288464 ATATCTGCATTAT 288476 | |||||||| || Sbjct 954 AGATCTGCATGAT 966 >seq20474 Length=655 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || ||||||||||| | ||||| || ||||| | || || || || ||| Sbjct 134 TCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAG 193 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||||||| || || || ||||| || || || || || Sbjct 194 ATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTG 253 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| |||| ||||| ||||| ||||| ||||| || || || ||||| Sbjct 254 TCAATTGTATCGGAGCTC---TCTACCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTC 310 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 311 ACAAAAATCTGCAT 324 >seq34564 Length=234 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| || || || | ||||| || | || || || || ||||| || | ||| Sbjct 232 TTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGC 173 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC- 288413 || ||||| || || || |||||||| || || |||||||| || || | || Sbjct 172 TGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCC 113 Query 288414 --GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 |||| || || ||||| ||||| ||||||||||| || |||||||| || |||||| Sbjct 112 GAGCTC---TCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGC 56 Query 288472 AT 288473 || Sbjct 55 AT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179117252110442