Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq691 111 3e-19 seq79 104 5e-17 >seq691 Length=12351 Score = 111 bits (122), Expect = 3e-19 Identities = 244/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 297278 GACCAACCGGTACCGATTCCACTCGAA-CCATTCACCAGAATGCTCGGAATAACAGGCAC 297336 |||||||| || ||||| || ||| || || || || | | ||||||| || | Sbjct 9144 GACCAACCCGTCCCGATACCG-TCGCTGCCGTTGACAAGCACCATGGGAATAATCGGGAT 9202 Query 297337 ATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTC 297396 || |||| ||||||||| | || || |||| ||| || || |||| || | ||| Sbjct 9203 GTACCACTCAGGTTCGATCGACTGGCCATCTTCATCCAGGTACTTGAGAATATCGTTGTC 9262 Query 297397 C---GTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGC 297453 | | |||| ||| || || || | | | ||| || |||||||| || || || Sbjct 9263 CAGAGGATCGT--AAATTCTA-CGCGTGAGTTGTTCCAGATTCGTGAAAATGTAACGAGC 9319 Query 297454 ACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCA 297513 ||| || |||||| || ||| || | || ||| |||||||| |||| ||| Sbjct 9320 ACTGGCTGCATCCTTGCCGCCCATTAAACGCGTACCAAACTGGCCGATCGGCGACAGAAG 9379 Query 297514 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 297573 || ||||| ||||||||||| |||||||||| | ||||||||| || || | | Sbjct 9380 GTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATGTTCACGATACAGCCCTGTAAACT 9439 Query 297574 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 297633 | ||||||||| ||||| || |||||| | ||||| || | ||||||||||| Sbjct 9440 TTGTTCGCCATGATGATACGCAGAATGCTCCGACACGTAGCCAGCCAGTTGTGCAACCTT 9499 >seq79 Length=34262 Score = 104 bits (114), Expect = 5e-17 Identities = 184/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 333728 CACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGAT 333787 ||| |||| || || ||||||||||| |||||||||| | || ||||| || || Sbjct 20320 CACAAACTTTGAAAGGTTTCCCTTGTAGATCTTCAGCTTACG---AGTCTCGTAGTGAAT 20376 Query 333788 AATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAAC 333847 ||| |||||| || | ||| | ||| || |||||||| ||||| || | ||| || Sbjct 20377 AATGTTGGTGCACACCGTGTCCAAGAAGCCAGAGTCGTGGGACACCATGATTGACGTCAC 20436 Query 333848 GTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTT 333907 | | | | | ||||||| | || |||| |||||| ||| | ||||| Sbjct 20437 ATTCGTCAAACTCGTCAGGTAGTTCTCCAACCACGCCACGTTCTTCACGTCCAAGTGGTT 20496 Query 333908 GGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAG 333967 |||||||| || ||||| | | | || ||| | ||||| ||||| || || | | Sbjct 20497 CGTCGGCTCATCGAGAAGCAAGATGTCAGCCTTCTGAAGCATGGCACGGGCCAGCTCCAA 20556 Query 333968 TTTCATTTTCCACCCTCCTGAAAGAGTG 333995 |||||| ||||| || || ||||||||| Sbjct 20557 TTTCATCTTCCAACCACCAGAAAGAGTG 20584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102377810829650