Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq13677 120 1e-22 seq2903 82.4 3e-11 >seq13677 Length=1044 Score = 120 bits (132), Expect = 1e-22 Identities = 135/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 6584 CTTTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6643 || |||||| ||||||| | ||| | || | || ||||||||| | | | ||| Sbjct 641 CTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGATC 582 Query 6644 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCC 6702 ||| ||| ||||| ||||||||| ||||| |||||||||||| ||| || ||||| Sbjct 581 GACCGCG-TCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACCC 523 Query 6703 CTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTG 6760 ||||| ||||| ||||| ||||| ||||| |||||| || ||||||| |||||||| Sbjct 522 GTGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCTG 465 >seq2903 Length=4332 Score = 82.4 bits (90), Expect = 3e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6620 GCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGC 6679 || ||||||||| | || ||| | ||| |||||| |||||||| | |||||| Sbjct 336 GCCGAGCCGGGCATCCTCTTCCTGGACCGCATCAACGAGGACAACAACCTGCGCTACTGC 277 Query 6680 GAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGG 6732 ||| |||||||||||| || |||||||| ||||| || || ||| ||||||| Sbjct 276 GAGGACATCGCCGCCACCAATCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187520827992750