Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq195 165 1e-35 seq1997 107 2e-18 >seq195 Length=24554 Score = 165 bits (182), Expect = 1e-35 Identities = 416/610 (68%), Gaps = 33/610 (5%) Strand=Plus/Minus Query 125747 TCCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT 125805 |||||| ||| ||| || || || |||||||| |||||||| ||||| || | ||| | Sbjct 23589 TCCAGCCTTGGAGTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTG-AAG-T 23532 Query 125806 GATAT--TCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCC-AAT 125862 || || | ||||| | || || |||||||| || |||| | | |||||| ||| Sbjct 23531 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAAT 23472 Query 125863 CTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCAT 125922 || || ||||| || | ||| |||| ||||||| |||| | |||||||| Sbjct 23471 GAGTAC-AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCAT 23413 Query 125923 ACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTC 125982 |||||||| | | ||||| | ||| | | ||| | | ||| || |||| || || Sbjct 23412 GCCGATGAGCTCAACAGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTC 23353 Query 125983 CCGCACGATGGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTT 126041 || | ||| |||| | | || | ||| | ||||| || || ||| |||| Sbjct 23352 ACGAATGATCTCGTGCACACGACTCTCCGGCAGCT-TATTGACCA--GT-TTG--GAGTA 23299 Query 126042 C------CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 126095 | || |||||| || || | |||||| ||||| ||| || |||||||| | Sbjct 23298 CATGAGGCA-GGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAA 23240 Query 126096 AGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCG 126155 ||| || || ||||||||||| || ||||||| |||||| || | || || || || | Sbjct 23239 AGCTGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAG 23180 Query 126156 AGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC- 126214 |||||||||| |||||||| | |||||||||| |||||||| || | || || || Sbjct 23179 AGAAGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGA-CGACACA 23121 Query 126215 TTTGTGTCAAACCACTTCATCGCCCACTGCGCCTTT-TTCTCGATACACGGGACGGT--- 126270 | |||| ||||||| | ||||| ||| |||| |||| | |||||||| || Sbjct 23120 CGCGGGTCACACCACTTGAGTGCCCA-AGCGGCTTTCTTCTTCACACACGGGATAGTGTC 23062 Query 126271 -CTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGA 126329 ||| ||| |||| || |||||| ||| | || ||||||||| | || |||| Sbjct 23061 AATGGCACGCAGCAAA-AGGTCCTTC---TCTACAGCGTCCTTGATGTACGTGTCAATGA 23006 Query 126330 GTTTTGAATA 126339 || ||||| Sbjct 23005 GTAGCGAATA 22996 >seq1997 Length=5797 Score = 107 bits (118), Expect = 2e-18 Identities = 663/1057 (63%), Gaps = 19/1057 (2%) Strand=Plus/Plus Query 114277 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 ||| || |||| || ||||| || || || | |||| || || || | |||||| || Sbjct 29 AATGAAGGCATCTGCCAGACCCTGAACCCCTAATCCAACCGGACGGTGACGCATATTTGA 88 Query 114337 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 114396 ||| || | || |||||| | || || || || ||| | || || ||| | || Sbjct 89 ATTTTCTGCTTCCGGAACCGGATAATAGTTTCTGTCAATGACCTTGTTCAGGTTTCTTGT 148 Query 114397 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 114456 ||| ||||| | | || |||| ||||| | || ||| || | | || Sbjct 149 TACACGTTTTGTTACGTTATAAAGCAGTTCGTGGTTGAA-CTGTCCGTTT-----TCCAC 202 Query 114457 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 114516 | || | || | | ||| || ||||| ||||| || | | ||||| ||| |||||| Sbjct 203 AAACATTGGCAATGAGATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAGTGTA 262 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 ||| || ||||| ||||||| || ||| || || |||| ||| || || ||||| Sbjct 263 CTCCATGATTTCTGTACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTTGA 322 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 || ||| |||||| || || ||||||||||| || || || || |||| || | Sbjct 323 TTTACGGTTTGCCGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTC 382 Query 114637 GAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGT---TGGCTCGCCCCTCCTC 114693 ||||| | ||| | | | || | | ||| | | ||| |||| || Sbjct 383 CAGAATTTTTTCCCAAAGTT---CTCTTGCCTTAATGGTTTTTCTTCCTCTGCCCTGTTC 439 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 || || || || || |||||||| |||||||| || | || || || || Sbjct 440 TTCATAAGAAGTATAAAGCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCGG-GC 498 Query 114754 CTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGT 114812 || | ||| || | | | |||| | | | |||| |||||| |||||||| | || Sbjct 499 ATTCGTTTGGACACATCAACGTCCATGTAGAATCTTCCTGAACACGTTTCATGAACAAGT 558 Query 114813 CTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 114872 | | |||| | || |||| | ||| || || |||||| | || || || Sbjct 559 CCGAAGTCCACATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTTTTCCATGGTTTT 618 Query 114873 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 114932 || || | || || | ||||| |||||||| | ||| | || | || | Sbjct 619 TCTTCAGGTCAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAAC 678 Query 114933 ACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 || || || | || |||||| |||||| | || || |||| || || || | Sbjct 679 TTCCTTTGCGTTTTCCTCCTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCA 738 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 115049 ||| |||| || || | || || ||||| || || ||| || |||| | Sbjct 739 ACATCGGAACAATTCCGTTTGACGTTCCGTTTGTTCCGCGGATATAGGAACCCGTGGCAC 798 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 |||| |||||| | || || || || ||| | | ||| |||| || | | Sbjct 799 GAACATTATGGATTGAAAGCCCGATTCCTCCAGCCGATTGTGAAATTTTGGCTGTTTGCT 858 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 | || | |||| || |||||||| ||| ||| |||| | |||||||||| | Sbjct 859 TTAGCGTATCGTAAATTCCGTCGATACTGTCGTCCTGCATTGCCAGAAGGAAGCAGGAAG 918 Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229 ||||||| || |||| || || || ||||| | ||||| || || || | || | || Sbjct 919 ACATTTGCGGTTTTGGAGTTCCGGCATTGAATAACGTTGGCGTTGCATGCGTAAAGA-AC 977 Query 115230 CT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 115288 | | ||||||| || || || ||||| || || | ||| | | || || || Sbjct 978 TTCTTGGACATCAGGTCATAAGTTTCCAATACTGCATCCAGGTCATTCAAATGGATTCCA 1037 Query 115289 ATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 115325 | | || ||||| ||||||| ||| ||| |||||| Sbjct 1038 ACGGCAACACGCATCAACATGTGTTGTGGTCTTTCCA 1074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597088233130120