Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq25614 136 4e-27 seq20474 107 2e-18 seq14623 100 3e-16 seq2166 93.3 5e-14 seq34564 91.5 2e-13 seq27836 86.0 7e-12 seq7414 86.0 7e-12 >seq25614 Length=477 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||||| ||| | ||||||||||| || |||||||||||||||||||||||| Sbjct 44 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 103 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| | || || ||||||||||||||||| || || | ||||||||| | || Sbjct 104 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 163 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 164 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAGCTC---TC 219 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || || || ||||| || ||||||||||||||||| Sbjct 220 AACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 >seq20474 Length=655 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || || | |||| || | ||| |||||| || |||||||| ||||| Sbjct 325 ACCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGC 384 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||| | ||||||||| | || Sbjct 385 CAAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGG 444 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || || | | | | ||||| |||| || Sbjct 445 GATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTC---TC 501 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || | |||||||| ||||| || || ||||| || ||||||||||| || Sbjct 502 GACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCATCTT 555 >seq14623 Length=969 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | || | ||||| ||| ||||| || ||||||||||| || Sbjct 260 CCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCA 201 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| ||||| || ||||| ||||| | || Sbjct 200 AGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGA 141 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||||| ||| ||||||| || | | | | ||||| |||| || Sbjct 140 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCG 84 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 || || | |||||||| ||||| || || || || || ||||||||||| |||| Sbjct 83 ACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTTCA 29 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || ||||| | || | ||||| || ||||||||||||||||| || || Sbjct 489 ACCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGC 430 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || |||| || |||||||| || || ||||| || || |||||||| | || Sbjct 429 CAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGG 370 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | | ||||||||| ||| || Sbjct 369 GATTCCTTCCTTGTCCTGGATCTT 346 >seq2166 Length=5462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 773 CCTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAA 832 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | ||||| ||| |||||| || |||| | | Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGA-CATT 891 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | |||| || ||||| || | ||||||||| ||||| || || ||||| || Sbjct 892 GTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCAC 951 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 952 AAAGATCTGCAT 963 >seq34564 Length=234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 42030 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 42089 ||||| || || || |||| | |||| || ||||||||||| || || || || | |||| Sbjct 232 TTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGC 173 Query 42090 TGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC- 42148 ||||| | || | || |||||||||| ||| || || | | | | ||||| Sbjct 172 TGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCC 113 Query 42149 --GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 |||| ||||| |||| |||||||| || || || || ||||| |||||||| ||| Sbjct 112 GAGCTC---TCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGC 56 Query 42207 AT 42208 || Sbjct 55 AT 54 >seq27836 Length=415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| |||||||| || | || || ||||||||||| || || Sbjct 148 TCCTTCTGAATATTGTAATCGGCCAGAGTACGACCATCTTCCAGCTGCTTACCGGCAAAG 89 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || | | ||||||||| | ||| | | |||||||||| ||| || Sbjct 88 ATCAACCTCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATCTT 42 >seq7414 Length=1926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || || || || | || || |||||||| || ||||| Sbjct 33 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 92 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | || | || ||||||||| ||| | || || | ||| Sbjct 93 AATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGTCTTCACGT 151 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| ||| || || || | ||||| || |||||||| | |||||| | Sbjct 152 TGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCTTCA 211 Query 42196 CAAAGATTTGCATTTT 42211 | || || ||||| || Sbjct 212 CGAAAATCTGCATCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542971484503760