Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq28136 147 2e-30 seq14623 140 3e-28 seq7414 114 1e-20 seq20474 111 2e-19 seq2166 111 2e-19 seq25614 100 3e-16 seq121 95.1 1e-14 seq31347 89.7 5e-13 seq19645 84.2 2e-11 >seq28136 Length=407 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| || || | || || ||||| |||||||||||||| || Sbjct 239 ACCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGC 180 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | ||||||||| ||| | || || || ||||||||||| || Sbjct 179 CAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGG 120 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || ||||| ||| ||| || | |||||| | | || || Sbjct 119 GATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAAC 60 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| ||||||||| |||| || |||||||| || ||||| || Sbjct 59 TTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTT 9 >seq14623 Length=969 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| ||||| || || || |||||||| || | ||| || | ||| Sbjct 245 AGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCT 186 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 185 TCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCC 126 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||||||| || | || ||| | || ||||| | ||| | |||| Sbjct 125 TGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTC 66 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | |||||| ||||| |||||||| || Sbjct 65 TTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| ||||| ||||| || || | ||| || | ||| Sbjct 929 AGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCT 870 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | || || ||||||||||| || || || ||||| || || Sbjct 869 TCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 810 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||||| || ||| ||| || | || || | |||||||| | ||| | |||| Sbjct 809 TGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTC 750 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 749 TTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || ||||||||||| || | ||| | | || || |||||||| ||| Sbjct 686 GTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCCG 627 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||||||||| || ||||| || ||||| || || || || ||| Sbjct 626 GCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 567 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || ||||| | || | ||||| || || | ||| Sbjct 566 ACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTT 507 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 506 TTAACAAAAATCTGCAT 490 >seq7414 Length=1926 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 ||||||| | |||||| || || | |||||| || || ||||||||||| || | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | || || |||||||||||||| |||| | ||||||||||| |||||||| Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTT 64397 ||||| || || || || || ||| || || | | | ||| || || || | Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGT--CCGACGACTCGACGT 178 Query 64398 CTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||| | |||||||| ||||| || || |||||||| ||||| || Sbjct 179 CAAGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATCTT 227 >seq20474 Length=655 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || || || || | ||| || || || || || ||||| || || Sbjct 325 ACCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGC 384 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||| || || | ||||||| ||||||||| || || Sbjct 385 CAAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGG 444 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||||||| || | ||| || | || || Sbjct 445 GATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGAC 504 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | || || ||||| |||||||| || Sbjct 505 CTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCATCTT 555 >seq2166 Length=5462 Score = 111 bits (122), Expect = 2e-19 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || |||||||| || | | || || | || || ||||||||||||||| ||| Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || ||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||| | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTGT 893 Query 64374 CCACTGTA-TC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || || | || |||| ||||| || | || | |||||||||||||| || || || Sbjct 894 -CAATGCAGTCGGACGGC-TCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCAC 951 Query 64432 GAAAATTTGCAT 64443 || || ||||| Sbjct 952 AAAGATCTGCAT 963 >seq25614 Length=477 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||| | |||||||| |||||||| |||||||| || | ||| | | || Sbjct 58 AAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATC 117 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || || | || |||| ||||||||| || ||||||||||| || || Sbjct 118 CTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTC 177 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | || ||||| | || | || Sbjct 178 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGT 237 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | |||||||| || |||||||| Sbjct 238 CTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || ||||||||||| || | ||| || |||| ||||||||||| || Sbjct 302 GTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCT 361 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||||||||| || || ||||| || || || | | || ||||| Sbjct 362 GCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGA-TCTTAGCTTT 420 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || | || ||| | || ||||| | ||| | |||||| ||||| Sbjct 421 AACATTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTCTTACCGGT 474 >seq121 Length=30622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||| ||||| || ||||||||||| || Sbjct 21083 ACCACCACGCAGACGCAGCACGAGGTGCAACGTCGACTCTTTCTGGATGTTGTAATCCGC 21142 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | | ||| | ||||| ||||||||||| || | || || ||||||||||| || || Sbjct 21143 CAGAGAGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGG 21202 Query 64336 AATTCCT 64342 ||||||| Sbjct 21203 AATTCCT 21209 >seq31347 Length=324 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || |||||||||||||| || | ||||||| |||| || |||||||| || Sbjct 216 GTCGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCA 275 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || | || |||| ||||||||| || || || || || || || || Sbjct 276 GCGAAGATAAGCCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 322 >seq19645 Length=690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || |||||||| |||||||| || |||| ||| || |||| Sbjct 103 AGCACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGGGTCCGGCCGTCC 44 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGG 64332 ||||||||||| ||||| | || |||| ||||||||| || Sbjct 43 TCAAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499422839043160