Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq1923 214 3e-50 seq14750 192 9e-44 seq26881 116 5e-21 seq3711 87.8 3e-12 seq17901 86.0 9e-12 seq2848 86.0 9e-12 seq1292 84.2 3e-11 >seq1923 Length=5946 Score = 214 bits (236), Expect = 3e-50 Identities = 356/504 (71%), Gaps = 14/504 (3%) Strand=Plus/Plus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 ||||| |||||||||||| ||||||||||||||| ||||||||| ||||| || | | | Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGAC-CGA 3822 Query 41441 GAC-GTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCA 41499 || |||||| | |||||||| ||||| |||||||| |||||| | |||||| | Sbjct 3823 CACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCGGCACCTA 3882 Query 41500 CTACATCGA----GCGTGCGCAGAAGGAGTGCGGCATGTGGCACAG---CAGCCTGCCGC 41552 || |||||| ||| ||| ||| | |||| || || | | | ||||||| Sbjct 3883 CTTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCGT-GCTCGGCTTCCACCTGCCGG 3941 Query 41553 ACAACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCA 41612 |||| || || ||||||||| || | | ||| ||| || |||||||| || Sbjct 3942 ACAAGGACCTGGCGTTCTTCATGGAAGGCGAGCCGCTGTTCGATGACTACGTCGAAGCCG 4001 Query 41613 TGCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCC 41672 || |||||||||||||| ||| |||||||| || | || |||| || | |||| | Sbjct 4002 TGTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCGATGATGTCGCGCGTGCTGG 4061 Query 41673 AAGCGCTGCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACC 41732 | | |||| | | ||||| ||| ||||| | | ||||||||||||||||| Sbjct 4062 CCGAGATGCGCCACCGCTTGCCGAAGTTCCAGCTGGCAGCGATGGCGGTGAACTGCCACC 4121 Query 41733 ACAACTATTGTG-AGCAGGAGAACCACTTCGGGC-GCAACGTGTGGGTCACGCGCAAGGG 41790 ||||||| ||| || |||| | ||| ||| | | ||| || ||| || || ||||| Sbjct 4122 ACAACTA-CGTGCAGAAGGAAACGCACCACGGCCAGGAAC-TGCTGGTGACCCGGAAGGG 4179 Query 41791 TGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTC 41850 || || |||| || |||| ||| ||||| |||||||| || |||||| ||| Sbjct 4180 GGCCGTCAGTGCCCGCGAAGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACGCGCAG 4239 Query 41851 GTACATCGTCAAGGGCAAGGGCAA 41874 |||||||| ||||||||||| Sbjct 4240 CTACATCGTGCGCGGCAAGGGCAA 4263 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40998 TGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAG 41057 |||||||||||| |||| |||| ||| || || || ||||||||| | || | | Sbjct 3435 TGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGATCCCGACCCGCG 3494 Query 41058 GTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGGTTCGTA 41117 |||| ||||| ||||| || || ||||| ||||||||||||||||||| ||| || || | Sbjct 3495 GTGCGATCATCCCGGCCGCAGTCGGCGTCGACATCGGCTGCGGCATGGCGGCCGTACGCA 3554 Query 41118 CCA 41120 ||| Sbjct 3555 CCA 3557 >seq14750 Length=960 Score = 192 bits (212), Expect = 9e-44 Identities = 487/722 (67%), Gaps = 28/722 (4%) Strand=Plus/Plus Query 41387 GGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTG 41446 |||||||| || ||||||||||||||| || || ||| | ||| | | | ||| Sbjct 6 GGCACGCTCGGCGGCGGCAACCACTTCATCGAGCTCTGCCTCGACGAAAGCGATGCCGTC 65 Query 41447 TGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATC 41506 ||| | |||||||| ||||| ||||||||| |||||| | |||||| ||| |||| Sbjct 66 TGGGTGATGCTGCACAGCGGCTCGCGCGGTACCGGCAACCTGATCGGCACCTACTTCATC 125 Query 41507 GAGCGTGCGCAGAAGGAGT--GCG----GCATG-TGGCACAGCAGCCTGCCGCACAACGA 41559 ||||| || | || | | ||| || || ||| || ||||||| |||| || Sbjct 126 GAGCGGGCTCGCGAGCAATTGGCGCATCGCGTGCTGGGGTTCCA-CCTGCCGGACAAGGA 184 Query 41560 TCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTGTG 41619 || || |||||| |||| | ||| ||| | ||||||| | || | || Sbjct 185 CCTGGCCTTCTTCATGGAGGGCGAGCCGCTGTTCGACGACTACGTGGAGGCCGTCTCCTG 244 Query 41620 GGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGCGCT 41679 ||||||||||| ||| || |||| || | || |||| || | |||| | | | | Sbjct 245 GGCGCAGGACTACGCCCGCGAGAACCGCGAGGCGATGATGTCGCGCGTGCTGGCCGAGAT 304 Query 41680 GCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGA-GGCGGTGAACTGCCACCACAACT 41738 ||| | | |||||| ||| ||||| |||| |||||| |||||||||||||||| Sbjct 305 GCGCCACCGCCTGCCGAAGTTCCAGCTGGAA-AAGATGGCGGTCAACTGCCACCACAACT 363 Query 41739 ATTGTG-AGCAGGAGAACCACTTCGG-GCGCAACGTGTGGGTCACGCGCAAGGGTGCGGT 41796 | ||| || |||||| ||| || | | | | || |||||| |||||||||||||| Sbjct 364 AC-GTGCAGAAGGAGACGCACGGTGGCGAGGAGC-TGCTGGTCACCCGCAAGGGTGCGGT 421 Query 41797 TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTACAT 41856 | || |||| | ||| |||||||||||||| || |||||| ||||| | ||| Sbjct 422 GAGCGCGCGTGCTGGCGAGCTGGGGATCATTCCCGGCAGCATGGGCGCGAAGAGCTTCAT 481 Query 41857 CGTCAAGGGCAAGGGCAATCCGCA----TTCGTACTGCTCGTGCAGTCACGGGGCAGGAC 41912 ||| ||||||||||| || | ||| || || ||||| ||||| || || | Sbjct 482 CGTGCGCGGCAAGGGCAACGCGGACAGCTTC-CACAGC---TGCAGCCACGGCGCCGGCC 537 Query 41913 GCCGTATGTCGCGCACCGAGGC-CGTCAAGCGAT-TCACCGTCGAAG-ACCTCGTGCAGC 41969 || || || |||| || || || ||| | | |||| || ||| || || Sbjct 538 GCGTGCTGAGCCGTACCGCCGCACGCCAGCAGATCACGCTGTCGCAGCACCGCG---AGG 594 Query 41970 AGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGT 42029 ||| | || ||||||| ||| | || ||| | || ||| ||||| |||| Sbjct 595 CCACGGCGCACGTCGAATGCCGCAAGGACGCGGGCGTGATCGACGAATCGCCGGCGGCGT 654 Query 42030 ACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACGC 42089 ||||||||||||| |||||| | || ||||| ||||||||||| || || ||| Sbjct 655 ACAAGGACATCGAGGCCGTGATGTCCGCGCAGAGCGACCTGGTGGAAGTGGTGCACACGT 714 Query 42090 TG 42091 || Sbjct 715 TG 716 >seq26881 Length=441 Score = 116 bits (128), Expect = 5e-21 Identities = 248/366 (68%), Gaps = 7/366 (2%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || || ||||| || | || ||||||||||| || | ||| ||||| | | Sbjct 68 AGCACCTGGGAACGCTCGGAACGGGTAACCACTTCATCGAGATCTGCCTGGACGAACACC 127 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 | ||||||| | |||||||| || ||||| || ||||| ||| ||||||| | Sbjct 128 AGTCCGTGTGGGTGATGCTGCACTCGGGATCGCGTGGGGTGGGGAACGCCATCGGCACCC 187 Query 41499 ACTACATCGAGCGTGCGCAGAAGGAGTGCGGCATGTGGCACAGCAGCCTGCCGCACAACG 41558 ||| |||||||| || ||||||| || ||| || ||| |||||| |||| | Sbjct 188 ACTTCATCGAGCTGGCCAAGAAGGACGCCGAGATGAACCAGCGCAACCTGCCCGACAAGG 247 Query 41559 ATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTGT 41618 | || |||| |||| || | | | | | ||| ||||||| | || || || Sbjct 248 ACCTGGCGTACTTCGAGGAAGGCGCGCAGTACTTTGGCGACTACGTGAAGGCCGTGGGGT 307 Query 41619 GGGCGCAGGACTTCGCTCGGCAG--AATCGTGCGGTGATGTTGCAGATCGTGATCCAAGC 41676 |||||||| | |||| | |||| || || | ||||||| || ||||||| || Sbjct 308 GGGCGCAGAAATTCG--CCGCAGCCAACCGCGAGGTGATGATGGGCCGCGTGATCGCCGC 365 Query 41677 GCTGCG--TCGTCATCTGCCGGCC-TTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCA 41733 |||||| || ||| | ||| |||||| | | || || |||||||||||||| Sbjct 366 GCTGCGCAAAGTGATCACCAAGCCGTTCGAGACGCATGTGGAAGCCGTGAACTGCCACCA 425 Query 41734 CAACTA 41739 |||||| Sbjct 426 CAACTA 431 >seq3711 Length=3527 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 186300 TTGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACC 186359 || |||||| |||||| ||||||||||||||| | ||||||||||| || ||||||| Sbjct 2567 TTAGAGCGGAAGACGAGGCTCGAACTCGCGACAACCAGCTTGGAAGGCTGGAGCTCTACC 2508 Query 186360 AACTGAGCTACGCCCGCA 186377 ||||||||||| ||||| Sbjct 2507 AACTGAGCTACTTCCGCA 2490 >seq17901 Length=771 Score = 86.0 bits (94), Expect = 9e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 186528 ATGGTCCGAGTGAGAG-GATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAA 186586 |||||| ||||| ||| ||||||||| ||||||| ||| ||||||| ||| ||||||| Sbjct 298 ATGGTCGGAGTG-GAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTA- 355 Query 186587 CCAGACTGCGCTACACTC 186604 |||||||||||||||||| Sbjct 356 CCAGACTGCGCTACACTC 373 >seq2848 Length=4404 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 186301 TGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACCA 186360 ||||||||| |||||| ||||||||||||||| ||||||||||| |||||||| Sbjct 4128 TGGAGCGGGAGACGAGGGTCGAACTCGCGACATGCAGCTTGGAAGGCTGCCGCTCTACCA 4069 Query 186361 ACTGAGCTACGCCCGCA 186377 |||||||||| |||||| Sbjct 4068 ACTGAGCTACTCCCGCA 4052 >seq1292 Length=7958 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 41000 ATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACG--CAAG 41057 ||||| |||| |||| ||||| ||| ||| || || ||||||||| | || |||| Sbjct 97 ATGCCCGACGTGCACCTGGGCATAGGCGCCACCGTGGGCTCGGTGATCCCGACCATCAAG 38 Query 41058 GTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCT 41096 | ||||||| |||||||| ||||||||||||||||||| Sbjct 37 G--CCATCATCCCGGCGGCCGTGGGCGTGGACATCGGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739559314004600