Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq16939 89.7 1e-13 >seq16939 Length=822 Score = 89.7 bits (98), Expect = 1e-13 Identities = 196/283 (69%), Gaps = 18/283 (6%) Strand=Plus/Plus Query 15460 ATGAACAAGTCGCAACTCATCGACGCCGTGGC-GAAGAACGCCGAGCTGACGAAGGCCCA 15518 |||||||| | || | ||||| ||||| || || ||| ||||| || | |||||| | Sbjct 300 ATGAACAAAACCGAATTGATCGATGCCGTCGCCGACGAA-GCCGAAGTGTCCAAGGCCGA 358 Query 15519 GGCGGCTCAATCCGTCGAAGCCGTGCTGAACGCGATCCAGCTCGGCCTGCAGGAAGACGG 15578 || | | ||||||| ||||| | | ||| | | |||| || |||| || Sbjct 359 AGCCGGCCGCGCCGTCGACGCCGTCATCTCCAGCATC-ACCAAGGCCCTCAAGAAG--GG 415 Query 15579 CGAC---GTGGCGCTGTCGGGCTTCGGCACCTTTGCCGTG-GCA-GCGCGCAAAGCACGC 15633 |||| ||| ||||| |||||||||||||| || ||| |||||| || || Sbjct 416 CGACAGCGTGACGCTGGTCGGCTTCGGCACCTTCCAGGTCCGCAAGCGCGCC--GCCCGT 473 Query 15634 ACCGGCCGCAATCCGGCGACGGGCGAATCGATCCAGATC---GCCGCCAGCAAGGCCGTG 15690 ||||||||||| ||| ||| ||||| ||||| ||||| ||| ||| || ||| | Sbjct 474 ACCGGCCGCAACCCGAAGACCGGCGACACGATCAAGATCAAGGCCTCCAAGAATCCCGCG 533 Query 15691 AAATTCAAGCCCGGCAAGGCACTGAAAGACGCCGTGAACTGAT 15733 |||||| | ||||| || ||||| || ||||| |||| || Sbjct 534 ---TTCAAGGCTGGCAAAGCCCTGAAGGATGCCGTAAACTAAT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120259625928246