Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011271.1 Length=155372 Score E Sequences producing significant alignments: (Bits) Value seq19878 93.3 4e-14 seq6617 86.0 6e-12 seq6008 84.2 2e-11 >seq19878 Length=680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115023 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 115082 ||||||||||| || || | | ||| |||||||| |||| || || |||||| Sbjct 285 GGCCCGGGCCGCGGTTCGGGTGCTGGTTCGCTGGTGGCCTATGTACTGAAGATCACCGAT 226 Query 115083 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 115142 |||||||| | ||||||||| |||||||||||||| ||||||| || || | Sbjct 225 CTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCC 166 Query 115143 TTCCCCGACATCGACGTCGACTTC 115166 | |||||| |||||||||||||| Sbjct 165 ATGCCCGACTTCGACGTCGACTTC 142 >seq6617 Length=2135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 116076 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 116135 |||||||| ||| ||||||||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 1569 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 1628 Query 116136 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 116192 | | | | ||||| ||||| | |||| | ||| |||||||||||| | ||| Sbjct 1629 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 1685 >seq6008 Length=2324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 116076 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 116135 |||||||| ||| |||| |||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 197 ACCTACGGGATCATGGTGTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 138 Query 116136 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAG 116186 | || || || | ||||| |||||| || ||| |||||||||||| Sbjct 137 TACAGCCTCGGTGGTGCCGACATGCTGCGCCGGGCCATGGGCAAGAAGAAG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496841586242080