Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq23296 140 3e-28 seq18880 89.7 5e-13 seq13906 84.2 2e-11 >seq23296 Length=550 Score = 140 bits (154), Expect = 3e-28 Identities = 158/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACC-GCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||| | ||||||||| | ||| ||||| ||||| ||||||||||||||| ||||| Sbjct 343 GCCGTTAACTGGAACAAGATTGAA-GACGATAAGGATCTGGAGGTGTGGAACCGCCTGAC 401 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGG--CAC 156051 || |||||||||||||||||| ||| | || |||| |||||||||||||| ||| ||| Sbjct 402 CAGCAACTTCTGGCTGCCGGAAAAGGTGCCCCTGTCGAATGACGTCCAGTCCTGGGCCAC 461 Query 156052 CAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTG 156111 | |||| | | | |||| | | | ||||| || || || ||||||||||| |||| Sbjct 462 C--CTGAGCCACGCCGAGCAGCAGCTTACCATTCGCGTCTTTACCGGCCTGACCCTGCTC 519 Query 156112 GACACCATCCAGGGCACCGTCGGCGCG 156138 ||||| | ||| ||| || |||||| Sbjct 520 GACACGGTGCAGAACACGGTGGGCGCG 546 >seq18880 Length=726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 647 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 706 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 707 CCTGCCCCCGCAAC 720 >seq13906 Length=1026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||||||| Sbjct 747 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCACAGGTTCAAAT 806 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 807 CCTGCCCCCGCAAC 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526364465243280