Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14623 113 4e-20 seq7414 100 3e-16 seq19645 91.5 1e-13 seq20474 84.2 2e-11 >seq14623 Length=969 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || | ||| | | |||| ||||||||||| |||||||| | Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| ||||| || || |||| | | || ||||| || ||||| || || Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||||| ||||| | | ||| || | ||| || Sbjct 368 ATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTGT-CAATGGTATCCGAGCTCTCAAC 310 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| ||||||||||| ||||| || || ||||||||| Sbjct 309 TTCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCATG 261 >seq7414 Length=1926 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || ||||| || || || |||| Sbjct 31 GACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCG 90 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | |||||| ||||| ||||| || ||||| ||||| ||| | || || || | Sbjct 91 AAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC-CTGAATCTTCGTCTTCAC 149 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | | ||| | |||||| || || | || | ||| || || |||| || | Sbjct 150 GTTG-TCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCT 208 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 209 TCACGAAAATCTGCAT 224 >seq19645 Length=690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||| || || |||| | Sbjct 541 GACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCA 482 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||||||||| || || || ||||| ||| ||| || | Sbjct 481 AAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACG 422 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| || | || || || ||||| || || Sbjct 421 TTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTC 362 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 361 ACGAAGATCTGCATGCCT 344 >seq20474 Length=655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| |||||| || || || || ||||| || || || | | Sbjct 131 GACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCA 190 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| ||||| || || || || || ||||| ||| || || | | Sbjct 191 AAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACA 250 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | || |||| ||| ||||||| || | || |||||||| || || || Sbjct 251 TTGT-CAATTGTATCGGAGCTCTCTACCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTT 309 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 310 CACAAAAATCTGCAT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041941632080