Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq29522 105 3e-18 seq19013 95.1 5e-15 >seq29522 Length=371 Score = 105 bits (116), Expect = 3e-18 Identities = 85/100 (85%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 24358 GTAACGTTATTATCCTACGCT-CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATA 24416 || || |||| ||||| ||| |||||| ||||||||||||| ||||| |||||||||| Sbjct 179 GTTACTTTATAATCCTCCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATA 238 Query 24417 ATCGCCAGGTCGCTGGTTCAAATCCAGCA-AGGCCACCAA 24455 ||||| |||||||||||||| ||||||| ||||||||| Sbjct 239 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAA 278 >seq19013 Length=720 Score = 95.1 bits (104), Expect = 5e-15 Identities = 318/487 (65%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 34252 GCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAG 34311 ||||||| ||| |||||| | | ||| |||| ||||||| || |||||||| Sbjct 595 GCCCAGCGGCTCCATCAATCGGTGGTGGTTGAACCAAGCCACCCATTCCAGCGTGGCCAG 536 Query 34312 TTCCACTTC-TGCACGGTTTTTCCAGCTCTTACG---GTGTATTACCTCCGCTTTGTAAA 34367 |||||| | ||| ||| || |||| | || ||| || ||||| || ||||| | Sbjct 535 TTCCACCGCCTGCTTGGTCTT-CCAGGGCCCGCGCCGGTGGATCACCTCGGCCTTGTAGA 477 Query 34368 GACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATG 34427 | || |||||| |||| |||| |||||||| || |||||| | || ||| | Sbjct 476 GCCCGTTGATGGTCTCGGCCAGGGCGTTGTCGTAGCTGTCGCCCTTGGAGCCCACTGACG 417 Query 34428 CCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTT 34487 | | ||||| || || ||||| | ||| | |||| || || || || Sbjct 416 ACTCGATGCCGGCCTCAGCCAGACGCTCGCTGTAGCGGATGGACAGGTATTGCGATCCAC 357 Query 34488 TATCGCTGTGATGGATGGTGCCAGACG----GACGA-----CGGGCCCACAACGCCTGCT 34538 ||| |||||| | ||| || | || ||| | ||| ||||| | Sbjct 356 GATCCGAGTGATGCACCAGGCCTTGCGTCTGGCCGGGCTTGCGGTCGTACAGGGCCTGTT 297 Query 34539 CCAGCGCATCCAGCACGAATGTCGTTTCCATAGAC--GATGAGACCCGCCACCCCACGAT 34596 ||||||| || |||||||| || | ||| || | | | | |||| |||||||| Sbjct 296 CCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGCTCTGGC--GCCAGCCCACGAT 239 Query 34597 GTATCCGGCA-AACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 34655 | ||||| ||||| || | | |||||||| ||||| |||||||||| || || Sbjct 238 GCG-CCGGCTGAACACGTCCACCACGAACGCCACGTAGACCCAGCCCTGCCAGGTCGAGA 180 Query 34656 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGCTTTA 34715 |||| || || || | ||||||||||||| || || || || ||||||| | || | Sbjct 179 CGTAGGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCTCGGCGCGGAACTGCCGGTTGA 120 Query 34716 CGCGGTC 34722 | ||||| Sbjct 119 CCCGGTC 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198664922913462