Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq28136 114 9e-21 seq32362 96.9 2e-15 seq14623 89.7 4e-13 >seq28136 Length=407 Score = 114 bits (126), Expect = 9e-21 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 ||| || ||||| || ||||||||||| ||| | | | ||||| || || ||||| Sbjct 209 GGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCC 150 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 || |||||| ||| || |||||| || || ||||| ||||| |||||| || Sbjct 149 CGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTT 90 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| | || || |||||||| |||| || |||||||| ||||| || || ||||| || Sbjct 89 CACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGT 30 Query 15159 TTTTACAAAAATTTGCATATT 15179 ||||| || || ||||| || Sbjct 29 CTTTACGAAGATCTGCATCTT 9 >seq32362 Length=298 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || | ||||| ||||| || || || ||||| |||||| Sbjct 232 CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCC 173 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | | || || | ||||| ||||| |||| | | ||| || || |||| Sbjct 172 AGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGA 113 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| |||||| | || || |||||| | || || Sbjct 112 ATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACC 53 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || ||||||| || || ||||| || |||||| Sbjct 52 TCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCATA 5 >seq14623 Length=969 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| | | || | ||| ||||| || || ||||| || ||||| || Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| ||||||| | || || || || |||||| ||| || ||||| || Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| ||||||| | || || ||||| | || || Sbjct 368 ATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACT 309 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| ||||| ||||| || || || ||||| Sbjct 308 TCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || || ||||||||| || ||| | ||||| | || Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTG 178 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| |||||| |||||||||||| ||||| |||||||| || ||||| Sbjct 177 CTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTT 118 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 |||||| | || || || || | || || || | || ||||| || || || Sbjct 117 TGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGT 58 Query 15153 CAGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| || || |||||||| || Sbjct 57 AAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14979 GGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 ||| || ||||| || |||||||||||| || |||| | || || | || || || Sbjct 687 GGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCC 628 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 || | || |||||||| ||||| ||||| || || ||||| || ||| || Sbjct 627 GGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTT 568 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| | || |||||||| | || || || ||||| || || || || || || || Sbjct 567 GACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGT 508 Query 15159 TTTTACAAAAATTTGCATA 15177 ||| |||||||| |||||| Sbjct 507 TTTAACAAAAATCTGCATA 489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || | ||| | |||||| ||||| || || ||||| || Sbjct 946 TGCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAG 887 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || ||| | ||||| | ||||| ||||| | |||| ||||| ||||| | Sbjct 886 CAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 827 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || || || ||| | || || || || | || | Sbjct 826 GGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCA 767 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||| |||||||| || ||||| ||||| || ||||| Sbjct 766 CTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357237202244615