Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7414 125 7e-24 seq25614 123 2e-23 seq14623 123 2e-23 seq19645 111 1e-19 seq20474 107 2e-18 seq451 107 2e-18 seq34564 96.9 3e-15 seq27836 95.1 1e-14 seq2166 84.2 2e-11 seq195 84.2 2e-11 >seq7414 Length=1926 Score = 125 bits (138), Expect = 7e-24 Identities = 177/244 (73%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 126890 CCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATC 126949 ||||| | || | ||| | || | ||| ||||| || ||||| ||||| |||| || | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || || ||| | ||||| |||||||| || ||||| ||| Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 || ||||||||| || ||| ||| | ||||| ||| | ||||| |||||| || Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGT-CGATCGAGTCCGACGACTCGACGTC 179 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT-TTATTCC 127127 | || | ||| ||||| |||| || || || ||||||||||| ||| | || || | Sbjct 180 AAGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCAT--CTTGTCTTGTTGC 237 Query 127128 TTTC 127131 |||| Sbjct 238 TTTC 241 >seq25614 Length=477 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || || || ||||||||||||||||| ||| || | ||| || Sbjct 61 CACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTC 120 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||| | | |||||| || || || || || ||||||||| Sbjct 121 CAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 180 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| |||| || | |||||||| ||||| ||||| | || | || | Sbjct 181 GATCTTGGCCTTGACGTTG-TCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCT 239 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || ||||||||||| || |||||| Sbjct 240 TTCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| || || ||||||||| | | || || || || ||||| ||||| Sbjct 302 GTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCT 361 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| ||||| || || || ||||||||| ||| || |||| Sbjct 362 GCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTTA-GCTTT 420 Query 127037 AG--TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| | | |||||| | ||||||||||||| || | || || ||||| || Sbjct 421 AACATTGT-CAATGGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTCTTACCGGTGAG 477 >seq14623 Length=969 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||| || | | || || ||| || |||||||||||| Sbjct 914 GTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCA 855 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || || || ||||| ||||||||| || || ||| Sbjct 854 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCTTAGCCTTC 795 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| ||||| ||||| | || | || || || || || ||| Sbjct 794 ACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGTTAGGGTT 735 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 734 TTGACAAAGATCTGCATG 717 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||||||| | | || | | ||| || ||||| ||||| Sbjct 686 GTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCCG 627 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| || |||||||| || || || |||||||| |||||| ||| || |||| Sbjct 626 GCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTG 567 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || |||| ||||| ||||| | ||| | ||| || || || || ||| Sbjct 566 ACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTT 507 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 506 TTAACAAAAATCTGCAT 490 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| | ||| || || || || |||||||||||| | | || || ||| || ||||| Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTG 178 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 |||||||| | |||| ||||| || || || || ||||| ||||| ||| |||||| Sbjct 177 CTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTT 118 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| | | || | |||||| | ||||||||||| | || | || |||||||| Sbjct 117 TGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGT 58 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || || ||||| Sbjct 57 AAGAGTTTTGACGAAGATTTGCAT 34 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||||||||| || ||| || || || || ||||| ||||| Sbjct 458 GTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 399 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | |||| || ||||| || || || || || ||||||||| ||| || || Sbjct 398 GCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTT 339 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| |||| ||||| ||||| | || | ||| || || ||||| ||| Sbjct 338 ACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTT 279 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 278 TTGACGAAGATCTGCATG 261 >seq19645 Length=690 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | |||||| ||| || ||||| || || Sbjct 544 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCG 485 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || ||||| || |||||||||||| ||| || |||| Sbjct 484 GCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTG 425 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||||| || |||| ||| | || || |||||||| || Sbjct 424 ACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTC 365 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 364 TTCACGAAGATCTGCATGCCT 344 >seq20474 Length=655 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | |||| || | ||| ||||| || || |||||||| || || Sbjct 326 CCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCC 385 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||| | | |||||| || || || Sbjct 386 AAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 445 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| ||||| | |||||||| Sbjct 446 ATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACC 505 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || || || || ||||| Sbjct 506 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 552 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| || || ||| ||| ||||| ||| || ||||| || ||| Sbjct 128 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCA 187 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || || ||||||||||| ||| || ||| Sbjct 188 GCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTA 247 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | ||||| || |||| || | || || || || || || Sbjct 248 ACATTGTCAATTGTATCGGAGCTCTCTACCTCGAGAGTGATTGTCTTACCAGTGAGGGTC 307 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 308 TTCACAAAAATCTGCAT 324 >seq451 Length=16219 Score = 107 bits (118), Expect = 2e-18 Identities = 290/440 (66%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTAT-GCTC- 145815 ||||| |||||||||||| |||||||| || | ||| | || || || || | | Sbjct 7627 GCGCATATAGTACATGCCCGTCTTGAGGCCCTTTTTCCATGCATAGAAATGCATAGATGT 7686 Query 145816 GACATGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATG 145875 || | || || ||| || ||||| | | ||| || ||||| ||||| |||| Sbjct 7687 GAGTTTACTGAT--CGTCGGATCGGCAATGTGAATATTGAGCGATTGACTCTGGCAAATG 7744 Query 145876 AAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTT 145935 ||| | || || || | |||||| | | ||||| || |||||||| |||| Sbjct 7745 TAAGCGCCACGATCAGCCGACATGTCCAAGACCGACTTTTGCTTGATTTCCCACACGGTC 7804 Query 145936 TTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCG 145995 || | ||||||| || | || || | | || ||||| || ||| ||| Sbjct 7805 TTGTACTTTTCCTTGATATGGTCTGGAATGGTCTTGACCTTTTGCACCGATCCACCGTCG 7864 Query 145996 GCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATG 146055 ||| |||| || || | ||| || || | ||| ||| || | || |||| || Sbjct 7865 TTCAAGATTTGATTACGGACTTCAGGCGTCCAGATGCCCAAATCAATCAGCTCCTTCATC 7924 Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115 |||| || |||||| | | |||||| || ||||| ||||| | |||| ||| Sbjct 7925 AGATGCTTGTTGACGATCGTAAACTCACCAGCGAGTACGCGACGATTGTACATGTTTGAT 7984 Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| ||||||||| || || ||||| || || ||||| || || | ||| || ||||| Sbjct 7985 GTGTACGGCTCGATGGATTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCAGTTGGCATA 8044 Query 146176 TACGCCACCAGCAAAGAGTT 146195 ||||| ||||||||||| Sbjct 8045 GGAGCCACTAGCAAAGAGTT 8064 >seq34564 Length=234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || ||||| |||||||||||| Sbjct 208 TCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTG 149 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||||| ||||| || |||| ||| | Sbjct 148 TCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGATG 89 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || ||||| || || || ||||| ||||||||| Sbjct 88 GTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCATG 53 >seq27836 Length=415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || ||||||||||||||| || Sbjct 184 CCACCACGGAGACGGAGCACCAGGTGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 125 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || || ||||||| | |||||| || || || Sbjct 124 AGAGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCAGGTGGA 65 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | |||||||| || || ||| Sbjct 64 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAGCTTTCCACT 5 Query 127067 TC 127068 || Sbjct 4 TC 3 >seq2166 Length=5462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| || || ||||| || | ||| || ||| || ||||| || || || | | Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 ||| |||||||| || || || || || ||||| ||| |||||||||||||| | | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTGT 893 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | | | ||| | ||| || || | || | || ||||||||||| || || |||| Sbjct 894 CAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACAA 953 Query 127104 AAATCTGCATG 127114 | ||||||||| Sbjct 954 AGATCTGCATG 964 >seq195 Length=24554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGT--TCAGCTAAAGTATCCCAAGATTTA 47494 |||||||||| || || || ||||| ||||| || ||| || || |||||||| Sbjct 23435 AGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTACTCATTGGGGGTGTCT-AAGATTTA 23492 Query 47495 CCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 |||| | |||| || ||||| | ||| ||| || || || |||||||||||||||| Sbjct 23493 CCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCACTTCAGGGCAAGACCAACTT 23552 Query 47555 TTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||||| || || ||||| Sbjct 23553 CTTTGAGAAGCGTGTAGGTGAATA 23576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475289564713360