Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14623 145 7e-30 seq7414 104 2e-17 seq25614 98.7 9e-16 seq34320 84.2 2e-11 seq19645 82.4 7e-11 >seq14623 Length=969 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||||||| |||||||| |||||||| |||||| | |||| ||| ||| Sbjct 242 ACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCC 183 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || |||||| || || |||||||| ||||||||||| ||||| || Sbjct 182 AGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGG 123 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| || | || | |||||| || ||||||||| ||||| | || ||| Sbjct 122 ATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTG 63 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| |||||||| || || ||||||||| Sbjct 62 CCGGTAAGAGTTTTGACGAAGATTTGCATC 33 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| |||||||||||||| ||||| || || | |||| || || Sbjct 470 ACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCG 411 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || |||||| ||||||||||| ||||| || ||||| || || || Sbjct 410 AGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGG 351 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||| || || ||| ||||| | || | ||| || Sbjct 350 ATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTA 291 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || || || ||||| Sbjct 290 CCAGTCAGGGTTTTGACGAAGATCTGCAT 262 >seq7414 Length=1926 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 45117 CCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG 45176 ||||| || | | ||| || |||||||| || ||||| || || || || ||||| | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 45177 GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATG 45236 || ||| |||| || || || ||| | ||||| || |||||||| || |||||| Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTC 45295 ||||| || || |||| | || || | || | || | | ||| || |||||||| || Sbjct 121 CCTTCCTTGTCCTGAA-TCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTC 179 Query 45296 GAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||| ||||| || | || || || ||||| |||||| Sbjct 180 AAGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATC 225 >seq25614 Length=477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| || ||||||||||| ||||| ||||| | ||| | ||| || Sbjct 61 CACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTC 120 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | || | | |||||||| || ||||| ||||| || || || Sbjct 121 CAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 180 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | |||||| || ||| ||||| | |||| || | Sbjct 181 GATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCT 239 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| ||||||||||| |||||||| Sbjct 240 TTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 >seq34320 Length=242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | |||| | |||||||||||||| |||||||| || || || || Sbjct 43 TGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATC 102 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||||||||| |||||| |||||||| | || ||||| Sbjct 103 TTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCC 161 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || || || || |||||| Sbjct 162 GGTGAGGGTCTTGACGAAGATCTGCATC 189 >seq19645 Length=690 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | ||| || || || || || ||||| ||||| ||||| || Sbjct 349 ATGCCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCC 290 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| |||||| | ||||||||||| Sbjct 289 GCGAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGG 230 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||||| ||| Sbjct 229 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCC 170 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| || || || || || || ||||| Sbjct 169 ACCTCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451802403228440