Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_012742.1 Length=44080 Score E Sequences producing significant alignments: (Bits) Value seq1098 109 2e-19 >seq1098 Length=8903 Score = 109 bits (120), Expect = 2e-19 Identities = 405/631 (64%), Gaps = 8/631 (1%) Strand=Plus/Plus Query 16029 AGTAACCCCGGTGCGCAGATGTTGGCTTATATCCGTGGATACTACGACGAGGACGGCAAG 16088 || ||||| || || ||||| |||| || ||||| | | || ||| |||||||| Sbjct 1285 AGCAACCCGGGCGCACAGATCCTGGCCTACGCGCGTGGCATCCATGATGAGAACGGCAAG 1344 Query 16089 CTAATTGGTGGGATGGGGCTGTCCGATATGCTTATCGACATCCCAGCATTCCAAGCCTTC 16148 | || | || |||| || |||| || ||||| ||| | | |||||||| Sbjct 1345 CGCATCGCCGGCCTGGGCATGGCCGACCGGCGCATCGATATCGAAAGCCTGAAAGCCTTC 1404 Query 16149 ATGCTGCATTGTCAGGCCAACTCCTACACCTACGATTACTACCTTAAGGAGCCACGCAAC 16208 |||||||| || || |||| | |||||| |||| || | ||| |||| | Sbjct 1405 ATGCTGCACTGCGCGGACAACGCGCTGGGCTACGACTACTGGCTGACCGAGGTGCGCAGC 1464 Query 16209 CACGACGAGGTACTAAGCGCCCTTGCTATGGCGGGGTTCGGGCAGTACACGAATTCCTCG 16268 ||| | | || || |||| | || |||| || ||||| ||| || || | Sbjct 1465 CACCAGGCAGTGCTCGACGCCATCGCGCTGGCCGGCTTCGGCCAGGTGACCTGGGCCAAG 1524 Query 16269 GGCCGCATCTCTGTAGCCTGGGCAGGTTCCGAGCAGCCGGTCTCGGCAGTCGTTAATATG 16328 ||||| | || |||||||| | |||||||| | || | || || || ||| Sbjct 1525 GGCCGGCTGGGCGTGGCCTGGGCGGCCGATGAGCAGCCCCTGTCCGGCGTGGTCAACATG 1584 Query 16329 GCGACGATTAAAGATGCGCAGTTCCAAGTGGATTACACTCTGTCTAACACGGCTGACGGC 16388 || ||||| || | | |||||||| || |||||||| ||| | ||| | || |||||| Sbjct 1585 GCCACGATCAAGAAGGGCCAGTTCCAGGTCGATTACACCCTGGCCAACGCTGCCGACGGC 1644 Query 16389 ATCGAGCTGTCTTACTTTGATAGAGAGATATGGGATACCACCACGCTGCGTGTTGCTGCA 16448 |||||| ||| | || | | ||| | | | |||||||| || | || Sbjct 1645 ATCGAGTACAGCTACCTGGACCGCCGCACCTGGAAGGCGGCGACGCTGCGCGTGCCGGCG 1704 Query 16449 CCCGGTGTAACAACTATGCTCAACCCCGCCCAGATTACCGCAGAGGGTGTGA---CGGAT 16505 || || || |||||||| || ||| |||| |||| ||||| || | | || Sbjct 1705 CCGGGCGTGGAGGTGATGCTCAATCCGGCCAAGATCACCGGTGAGGGCGTCAGCTCCGAA 1764 Query 16506 GCCGCGCGGGCAGCGGAGCTTGCCCGGTACCATCTCGGGCAGTCTCTGTATCAGTACAAG 16565 ||| | || ||| ||| || || | ||||| | |||| | ||||| |||||| Sbjct 1765 GCC---CATGCCGCGATGCTGGCGCGTTGGCATCTGGCGCAGAGCGTCTATCAATACAAG 1821 Query 16566 GATATTTCCTTCGCCACGGACCTAGAGCACCTGTCTTAC-CGCAGGCTATCTTTGCTGTC 16624 || || | ||| ||| | ||||||||| | ||| ||| || | || ||||| | Sbjct 1822 TCGATCAGCTACAGCACCGACATCGAGCACCTGGCCTACTCGC-GGTTGTCGGTGCTGGC 1880 Query 16625 CCTCTCCCACGACCTAACACAGTGGGGGTTC 16655 | |||||||| || |||||||| ||| Sbjct 1881 GTTGCAGCACGACCTTACCCAGTGGGGCTTC 1911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140874922071756