Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq30729 95.1 2e-14 seq14841 91.5 2e-13 seq5180 89.7 6e-13 seq6460 86.0 8e-12 seq19254 84.2 3e-11 >seq30729 Length=339 Score = 95.1 bits (104), Expect = 2e-14 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGG-AGGCTTTCACCT-CGCTAGTTTTCAAGACTA 31348 |||||||| ||||||||||||||||||| |||||| ||||| || ||||||||||||| Sbjct 228 GCGGAGAGAGTGGGATTCGAACCCACGGTAGGCTTACACCTACGGCAGTTTTCAAGACTG 287 Query 31349 GAGCCTTCAACCACTCGACCACCTCTCCATTCTTCT 31384 ||||| |||| |||| ||| |||||| || |||| Sbjct 288 CTGCCTTAAACCGCTCGGCCATCTCTCCGTT-TTCT 322 >seq14841 Length=953 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 32009 TGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCC 32068 ||||||| | | |||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 99 TGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 40 Query 32069 AGCTGAGCTA 32078 || ||||||| Sbjct 39 AGTTGAGCTA 30 >seq5180 Length=2659 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGGAGGCTTTCACC--TCGCTAGTTTTCAAGACTA 31348 |||||||| |||||||||||||||||||| | ||| ||| |||| ||||||||||| Sbjct 956 GCGGAGAGAGTGGGATTCGAACCCACGGAAGGTTTGACCCTTCGCCGGTTTTCAAGACCG 1015 Query 31349 GAGCCTTCAACCACTCGACCACCTCTCC 31376 | ||||| |||| |||| ||| |||||| Sbjct 1016 GTGCCTTAAACCGCTCGGCCATCTCTCC 1043 >seq6460 Length=2180 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGGAGGCTTTCACC--TCGCTAGTTTTCAAGACTA 31348 |||||||| |||||||||||||||||||| | ||| ||| |||| ||||||||||| Sbjct 2095 GCGGAGAGAGTGGGATTCGAACCCACGGAAGGTTTAACCCTTCGCCGGTTTTCAAGACCG 2154 Query 31349 GAGCCTTCAACCACTCGACCACCTCT 31374 | ||||| |||| |||| ||| |||| Sbjct 2155 GTGCCTTAAACCGCTCGGCCATCTCT 2180 >seq19254 Length=709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 176118 AGTATGG-GCAGGGAG--GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCC 176174 || |||| | |||||| ||||||||||| ||||||| |||||| |||||||||||||| Sbjct 430 AGAATGGTGGAGGGAGTTGGATTTGAACCAACGTAGGCTGAGCCAACGGATTTACAGTCC 489 Query 176175 GCCTCCATTAACCACTCGGACA 176196 | | || |||||||||||| || Sbjct 490 GTCCCCTTTAACCACTCGGGCA 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621848428834160