Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq195 165 1e-35 >seq195 Length=24554 Score = 165 bits (182), Expect = 1e-35 Identities = 409/606 (67%), Gaps = 25/606 (4%) Strand=Plus/Minus Query 127220 TCCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCT 127278 |||||| ||| ||| || || || |||||||| |||||||| ||||| || | || Sbjct 23589 TCCAGCCTTGGAGTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGA 23530 Query 127279 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCC-AATCT 127337 ||| | ||||| | || || |||||||| || |||| | | |||||| ||| Sbjct 23529 GATCATGTCCATCCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAATGA 23470 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 || || ||||| || | ||| |||| ||||||| |||| | |||||||| | Sbjct 23469 GTAC-AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGC 23411 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||||||| | | ||||| | ||| | | ||| | | ||| || |||| || || | Sbjct 23410 CGATGAGCTCAACAGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTCAC 23351 Query 127458 GTACGATGGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCC 127516 | | ||| |||| | | | || | ||| | ||||| | || ||| |||| | Sbjct 23350 GAATGATCTCGTGCACACGACTCTCCGGCAGCT-TATTGACCA--GT-TTG--GAGTACA 23297 Query 127517 ACAG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 127571 || |||| || || | |||||| ||||| ||| || |||||||| |||| Sbjct 23296 TGAGGCAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGC 23237 Query 127572 ACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGA 127631 ||||| ||||||||||| || ||||||| |||||| || | || || |||||||||| Sbjct 23236 TGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGA 23177 Query 127632 AGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTT 127690 ||||||| |||||||| | |||||||||| |||||||| || | || || || Sbjct 23176 AGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGA-CGACACACGC 23118 Query 127691 GTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT----CTG 127746 | ||| ||||||| | ||||| || || |||| | ||| |||| || || Sbjct 23117 GGGTCACACCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATG 23058 Query 127747 GATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTT 127806 | ||| |||| || |||||| ||| | || ||||||||| | || |||||| Sbjct 23057 GCACGCAGCAAA-AGGTCCTTC---TCTACAGCGTCCTTGATGTACGTGTCAATGAGTAG 23002 Query 127807 TGAATA 127812 ||||| Sbjct 23001 CGAATA 22996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613234657095240