Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq451 105 1e-17 >seq451 Length=16219 Score = 105 bits (116), Expect = 1e-17 Identities = 398/613 (65%), Gaps = 21/613 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 |||||| || |||||||||||||||| |||| || | | | || ||||||||| Sbjct 7585 CTTGTCTACGGTGAACTGAATGGCGT---CGGCTTTTGGGCGTCCGCGCATATAGTACAT 7641 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| |||||||| | ||| | || | ||||| || | ||||| || | | Sbjct 7642 GCCCGTCTTGAGGCCCTTTTTCCATGCATAGAAATGCATAGATGTGAGTTTACTGATCGT 7701 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || ||||| |||||||| || || || || || ||| ||| || ||||| ||||| | Sbjct 7702 CGGATCGGCAATGTGAATATTGAGCGATTGACTCTGGCAAATGTAA-GCGCCACGATCAG 7760 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | ||| | | | | ||| ||| || |||||||| |||||| || || || Sbjct 7761 CCGACATGTCCAAGACCGACTTTTGCTTGATTTCCCACACGGTCTTGTACTTTTCCTTGA 7820 Query 204075 TGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | || | || | |||| || | || | ||| || |||| || | | | || Sbjct 7821 TATGGTCTGGAATGGTCTT--GACCTTTTGCACCGATCCACCGTCGTTCAAGA-TTTGAT 7877 Query 204133 CCTCGTC-TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | || | ||| |||||||| ||||||||| || ||| || ||||| Sbjct 7878 TACGGACTTCAGGCGTCCAGATGCCCAAATCAATCAGCTCCTTCATCAGATGCTTGTTGA 7937 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| ||| || || | || || | || || ||| ||| ||| | || |||| Sbjct 7938 CGATCGTAAACTCACCAGCGAGTACGCGACGATTGTACATGTTTGATGTGTACGGCTCGA 7997 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | || |||||||| | ||||| || || || || ||||| ||||||| |||| Sbjct 7998 TGGATTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCAGTTGGCATAGGAGCCACTAGCA 8057 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-----GTG 204366 ||||| || | ||||| || || | ||||| | ||||||||| | Sbjct 8058 AAGAGTTACGAATACCGTGCTTGATCACATTCTCCTTCAAGGCGGTCCAGTCCCAAAGAC 8117 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 || || || | || ||||||||||| || || ||||| || | ||| | ||| Sbjct 8118 CAGACGAC--GGAGTGACACCCCACATGTCAAATTGGAAGATCCCCTTGCTGGCAGGGGA 8175 Query 204427 GCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 8176 GCCCTGGAACGTC 8188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794801962241840