Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2166 132 5e-26 seq7414 122 1e-22 seq19645 118 1e-21 seq14623 109 6e-19 seq34320 104 3e-17 seq25614 104 3e-17 seq28136 100 3e-16 seq20474 98.7 1e-15 seq34564 82.4 9e-11 >seq2166 Length=5462 Score = 132 bits (146), Expect = 5e-26 Identities = 147/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || | || ||||||||||||||||| || Sbjct 773 CCTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAA 832 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||| | ||| | | ||||| ||| ||| |||| ||||| | | Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGA-CATT 891 Query 46523 GCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | || | |||| || ||||| |||| ||||||||| ||||| ||||| || || || Sbjct 892 GTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCAC 951 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 952 AAAGATCTGCAT 963 >seq7414 Length=1926 Score = 122 bits (134), Expect = 1e-22 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| || |||||| || || ||||||||| | ||||| | Sbjct 9 ACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCC 68 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| ||||| ||||||||||| | || | || ||||| Sbjct 69 ATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTT 128 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| |||| | ||| | | | || ||| ||| || || || | |||| Sbjct 129 GTCCTGAATCTTCGTCTTCA-CGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGA 187 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || |||||||||| ||| || || || || ||||| ||| Sbjct 188 TCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATCTTG 228 >seq19645 Length=690 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | || ||||| | || ||||||||||| |||||||| Sbjct 311 CTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAA 252 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| ||||||| ||||| | Sbjct 251 TATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATT 192 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| ||||| || | ||||||||| || || || || || || Sbjct 191 GTCAATCGTGTCGGAGCTC---TCCACCTCGAGCGTGATGGTCTTCCCGGTAAGGGTCTT 135 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 134 CACGAAGATCTGCAT 120 Score = 109 bits (120), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || ||||||||||| ||||| || Sbjct 539 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAA 480 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 479 GATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 420 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| ||||| || | || ||||| || || |||||||| || Sbjct 419 ATCGATCGTGTCGGAGCTC---TCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTT 363 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 362 CACGAAGATCTGCAT 348 >seq14623 Length=969 Score = 109 bits (120), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | || |||||||| ||| || || || ||||||||||| | Sbjct 946 TGCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAG 887 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || |||||||| || || || || |||| |||||||||||| | | Sbjct 886 CAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 827 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || ||||||||| ||||| ||| | | | | ||||| |||| | Sbjct 826 GGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTC---T 770 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| || ||||| || || || || ||||| |||||||| ||||| Sbjct 769 CCACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || ||||| | || ||||||| || |||||||| ||||||||||| | Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||||||||| ||||| ||||||| || |||||||| | ||| Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | ||||||||| |||||| ||| | | || | | || || |||| | Sbjct 368 ATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTGT--CAATGGTATCCGAGCTC---T 314 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| ||| || || || || ||||| ||||| || ||||| ||||| Sbjct 313 CAACTTCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||||| ||||| || || || ||||| ||||| |||| Sbjct 718 TGCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGG 659 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | || ||||||||||| ||||| || || || ||||||||||| | | Sbjct 658 CAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGG 599 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || ||| |||||| |||||| ||||| | | | || || |||| | Sbjct 598 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTC---T 542 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| ||||| || || || || || ||||||||||| || ||||| Sbjct 541 CAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | || ||||||| || ||||| ||||||||||| |||| Sbjct 262 TGCCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGG 203 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || |||||||| || || ||||||| ||||| ||||| | | Sbjct 202 CAAGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGG 143 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || ||||| ||| ||| || ||| | | | | ||||| |||| | Sbjct 142 GAATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTC---T 86 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || || | |||||||| ||||| || || ||||| || ||||||||||| || Sbjct 85 CGACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 >seq34320 Length=242 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| |||||||||| | || || | || |||||||||||||| ||||| ||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-C 46524 | | ||||||||| | ||| | || ||||||||| |||||| ||||| ||| | | Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTC 119 Query 46525 CACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | ||||| |||| || || || | |||||||| ||||| || || || || || Sbjct 120 GATGGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 176 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 177 GAAGATCTGCATCTTG 192 >seq25614 Length=477 Score = 104 bits (114), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||||| ||| | ||||| ||||| || |||||||| |||||||| || | Sbjct 42 TGCCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAG 101 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || | | || || |||||||| || ||||| || | | ||||||||| | | Sbjct 102 CCAAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGG 161 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | ||||||||| |||||| ||||| ||| | | | ||||| |||| Sbjct 162 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAGCTC--- 217 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || || || || || || ||||| |||||||||||||| Sbjct 218 TCAACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || ||||| | || || || | ||| || || ||||| ||||| |||| Sbjct 270 TGCCACCCCTCAAACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGG 329 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || |||| || |||||||| || ||||| |||| ||||||||||||| | Sbjct 330 CAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGG 389 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | | ||||||||| |||||| Sbjct 390 GGATCCCTTCCTTGTCCTGGATCTT 414 >seq28136 Length=407 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||| || ||||| || ||| || || || ||||| || | |||||||| | || Sbjct 224 CAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATC 165 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||| || ||||||| || |||||||||| ||| | | || ||||| Sbjct 164 TTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTC 105 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | ||| || ||| | | | | || ||||| ||| || || | || ||||| Sbjct 104 CTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGT 45 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||||||||||| || || || ||||| ||||| |||| Sbjct 44 CTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTTGC 7 >seq20474 Length=655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | | ||||| | || || |||||||| || ||||| Sbjct 361 CTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAA 420 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 421 GATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTTACATT 480 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| ||||| || || || || Sbjct 481 ATCGATTGTGTCGGAGCTC---TCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTT 537 Query 46579 AACAAAGATTTGCATTTTG 46597 ||| ||||||||||| ||| Sbjct 538 AACGAAGATTTGCATCTTG 556 >seq34564 Length=234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 |||||||| | || || | | |||| ||||||||||| || || || || | | |||| Sbjct 232 TTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGC 173 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC- 46533 ||||| | || | || |||||||||| |||||| ||| | | | | ||||| Sbjct 172 TGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCC 113 Query 46534 --GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 |||| ||||| || | |||||||| || || || || || || |||||||| ||| Sbjct 112 GAGCTC---TCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGC 56 Query 46592 AT 46593 || Sbjct 55 AT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564987299906280