Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14623 105 5e-18 seq28136 86.0 4e-12 >seq14623 Length=969 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || ||| || || | |||||| || |||||| || ||||| || || || Sbjct 945 GCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGC 886 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || |||| || | ||||| || |||| || | |||||||| || | ||| Sbjct 885 AAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 826 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||| || || | | |||| | ||||| | ||| ||| Sbjct 825 GATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATG--GTGTCCGAGCTCTCC 768 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||||||||| || ||||| |||| ||||| || |||||||||||| Sbjct 767 ACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATG 717 >seq28136 Length=407 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| |||| | |||| |||| ||||| || || || |||| Sbjct 202 TCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAAT 143 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCG 39646 || | ||| ||||| || | || | ||||||||||| ||||| || || | Sbjct 142 ATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTG 83 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||| || |||||| || || || || || || || ||||| | || |||| Sbjct 82 TCG--ATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTA 25 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 24 CGAAGATCTGCAT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347219143262387