Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq195 194 2e-44 seq14623 138 1e-27 seq25614 122 9e-23 seq7414 116 4e-21 seq34320 109 5e-19 seq19645 109 5e-19 seq32362 98.7 1e-15 seq2166 89.7 5e-13 seq121 82.4 8e-11 >seq195 Length=24554 Score = 194 bits (214), Expect = 2e-44 Identities = 379/555 (68%), Gaps = 4/555 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||| ||||||||| ||||| ||||| || | || || || || | | Sbjct 23299 ACATGAGGCAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATT-CGAA 23241 Query 132947 AAGTCAAG-CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 ||| || || |||||||| || ||||| || ||||| || |||| | ||| ||| Sbjct 23240 AAGCTGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCA 23181 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || ||||||| ||||| || | ||||| || | || ||||| || | | | | Sbjct 23180 GAGAAGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACA 23121 Query 133066 TTGCTGGCGAT-CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 || || | ||| || ||||| |||| || | || || ||||| || || || Sbjct 23120 C-GCGGGTCACACCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTC 23062 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGT 133184 ||||| || |||| || |||||| | | | | ||| ||||| ||||| Sbjct 23061 AATGGCACGCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAG 23002 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 |||||| | |||||||| | |||||| || || || ||||| ||||| || ||||| || Sbjct 23001 CGAATAGACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGC 22942 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 ||| ||||||||||| | ||| | | |||| ||||| || || ||||| || Sbjct 22941 TTCGGGAACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATC 22882 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||||| || || ||||| ||||| |||||||| || || ||||||||||| | | | Sbjct 22881 ACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTT 22822 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 | ||| || |||| | ||| |||| |||||| | ||||||||||| ||||| Sbjct 22821 TTTCCAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTC 22762 Query 133425 GGCTTTTTTGTACAT 133439 ||||| |||||||| Sbjct 22761 AGCTTTCTTGTACAT 22747 >seq14623 Length=969 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| || || ||||| |||||||| | || |||||| | Sbjct 31 AAGATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGC 90 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | |||||||| || || || || |||||| | ||| Sbjct 91 TCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGAC 150 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | || || || |||||||| || | || ||||| ||| ||| Sbjct 151 CAACAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTAC 210 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| |||||| | ||||||||| | || || ||| |||| || ||| Sbjct 211 AATATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGC 261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || || |||||| | || || ||| | | Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||||||||| |||||| | ||||| Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || || | | ||||| ||| |||||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || |||| |||| || ||| |||| || ||| Sbjct 670 ATCCAGAAAGAATCCACCTTGCACCTGGTCCTCCGTCTGAGGGGTGGC 717 >seq25614 Length=477 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || || || || || || || | || || ||| | | Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||||||| | ||||| Sbjct 210 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 152 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || |||||||| || | | ||| | || ||||| Sbjct 151 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAA 92 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| |||| |||||||||||||| ||| | ||||| ||| Sbjct 91 TATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGGC 43 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 ||||| || || |||||||| |||| |||||| | | |||| | | | | ||||| Sbjct 477 CTCACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAA 418 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| || || || ||| ||||||| ||||| || || | ||| || Sbjct 417 GCTAAGATCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGA 358 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| || ||||| ||| ||||||||||| || ||| | || || Sbjct 357 AAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCTC 298 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || | || || |||||||| || ||| Sbjct 297 CACCTTGTTCTCCGTTTGAGGGGTGGC 271 >seq7414 Length=1926 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | |||||||| || ||||| | ||||||||| | Sbjct 227 AAGATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCG 168 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| || | | | | |||| || || | ||||| || || ||||| | || Sbjct 167 TCGGACT-CGATCGACAACGTGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCTGA 109 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | |||| ||| ||||| |||||||| || | ||||| | | |||||| Sbjct 108 CCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGTTGAGCGACTA 49 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||||| || ||||| |||||||||| | ||||| ||| || Sbjct 48 CAACATTCAGAAGGAGTCGACGCTGCACCTTGTGCTTCGTCTG 6 >seq34320 Length=242 Score = 109 bits (120), Expect = 5e-19 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| | Sbjct 191 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 132 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG- 38358 |||||| | | | |||| | || | || |||| ||||| || || || ||||||| Sbjct 131 TCCGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCAT-CCCGCCGG 74 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | ||| ||||| ||||| || || | || ||| | ||||| Sbjct 73 ACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCCGACT 14 Query 38419 ACAACATCCAAAA 38431 |||||||||| || Sbjct 13 ACAACATCCAGAA 1 >seq19645 Length=690 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || ||||| ||| |||| || ||| | || Sbjct 348 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTCC 407 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| |||| ||||| ||||| ||||| | ||||| Sbjct 408 GACACGATCGATAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCA 466 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || ||||| || || | ||||| || |||||||| Sbjct 467 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAA 526 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | ||||| ||| Sbjct 527 CATCCAGAAGGAGTCGACCCTTCACCTTGTGCTCCGT 563 >seq32362 Length=298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || ||| | || ||||| || ||||| | || || ||| | || Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | |||| ||||| | ||||| || || ||||| | || || Sbjct 66 GATACGATTGATAACG-TAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 124 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || || ||||||||||| || | ||| || || ||| || || Sbjct 125 GCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAA 184 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || || | || ||||| || | || || Sbjct 185 CATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGG 232 >seq2166 Length=5462 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | ||||| ||| | || Sbjct 963 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGTTGGACGTGGAGCCGTCC 904 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| || | | | | || | ||||||| || || || || ||||| | ||||| Sbjct 903 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGAAAAGGAAGGTATTCCGCCTGACCAG 844 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || ||||| ||||| || || | || || || ||||||||| Sbjct 843 CAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGAACGCTTTCGGACTACAAC 784 Query 38424 ATCCA-AAAGG 38433 ||||| ||||| Sbjct 783 ATCCAGAAAGG 773 >seq121 Length=30622 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||||||| | ||||| ||||| || || | ||| ||||| |||||||| || | ||| Sbjct 21208 GGAATTCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGC 21149 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 | || || ||||||||||| || || ||||| |||| | ||||||||| || | Sbjct 21148 TCTCTGGCGGATTACAACATCCAGAAAGAGTCGACGTTGCACCTCGTGCTGCGTCTGCGT 21089 Query 38466 GGCGG 38470 || || Sbjct 21088 GGTGG 21084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499950604485760