Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq1923 104 9e-18 seq14750 87.8 7e-13 >seq1923 Length=5946 Score = 104 bits (114), Expect = 9e-18 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 53315 CAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGCATGTGG 53372 ||| ||| || |||| ||||| || |||||| | || |||||| ||| |||| Sbjct 3374 CAGGCGCATGAGCAGCTGCGCAACA--TCGCCGCGATCCCGTTCGTTGGGCCGTGGGTGG 3431 Query 53373 CGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 53432 | ||||||| || | ||| | || |||||| | |||||| |||||||||||||| Sbjct 3432 CCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGATCCCGACCC 3491 Query 53433 AGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCGCAGCCC 53492 || || | |||||||| || ||||||||||| || |||||||||||| || | | Sbjct 3492 GCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATCGGCTGCGGCATGGCGGCCGTAC 3551 Query 53493 GCACCACG 53500 |||||||| Sbjct 3552 GCACCACG 3559 Score = 95.1 bits (104), Expect = 5e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755 ||||| ||||||||||| |||||||| ||||||||||| |||||||| ||| | |||| Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807 |||||| || | |||||| ||| ||||| ||| ||| ||| ||||| Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCG 3875 >seq14750 Length=960 Score = 87.8 bits (96), Expect = 7e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 53697 AGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACC 53756 || |||||||||| ||||||||||| |||||||||||||| ||||||||| | ||| Sbjct 1 AGATCGGCACGCTCGGCGGCGGCAACCACTTCATCGAGCTCTGCCTCGACGAAAGCGATG 60 Query 53757 GCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807 ||| ||| || | |||||| ||| ||||| || ||| ||| ||||| Sbjct 61 CCGTCTGGGTGATGCTGCACAGCGGCTCGCGCGGTACCGGCAACCTGATCG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190511565292080